Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30f01
(194 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1013 - 7931756-7935109 28 1.2
02_05_0230 + 27029725-27030871,27030995-27031113,27031225-270313... 28 1.2
08_02_0783 - 21166491-21166892,21167139-21167251,21168127-211682... 27 1.6
05_05_0255 + 23643568-23644761 26 3.7
05_03_0188 + 9417186-9417306,9417418-9417604,9417669-9417801,941... 26 3.7
06_03_1382 - 29758759-29758806,29758888-29758943,29759901-297600... 26 4.9
03_02_0914 - 12351553-12351679,12351966-12352102,12352558-123526... 26 4.9
03_02_0824 + 11556128-11556989,11557515-11559134,11559236-11559825 26 4.9
01_04_0018 + 15128174-15128316,15128445-15128544,15129573-151297... 25 6.4
05_05_0262 - 23666184-23666262,23666564-23667759 25 8.5
04_01_0609 + 7966263-7966366,7967945-7968706,7972607-7972851,797... 25 8.5
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 27.9 bits (59), Expect = 1.2
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +2
Query: 29 VLEVIGCGSKRITCNP---ENPPCKK*VCRRWTKPSYRD-HSTSGDVTAGLLG 175
VL I CGSK I CN +N C C R PS D +GD ++ G
Sbjct: 627 VLRNIPCGSKDIRCNQPCGKNRQCGMHACNRSCHPSPCDPPPANGDASSSTGG 679
>02_05_0230 +
27029725-27030871,27030995-27031113,27031225-27031349,
27031491-27031590,27031680-27031757,27032818-27032901,
27033077-27033162,27033869-27034049,27034596-27034646
Length = 656
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 135 SLYDGFVHRLQTYFLHGGFSGLH 67
S YDG +H L+ F H G GL+
Sbjct: 557 SKYDGVLHALKEIFQHEGLQGLY 579
>08_02_0783 -
21166491-21166892,21167139-21167251,21168127-21168208,
21168298-21168416,21168471-21168528,21168954-21169016,
21169641-21169850,21171549-21171731
Length = 409
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 123 GFVHRLQTYFLHGGFSGLH 67
GFVH++ T+ GF GLH
Sbjct: 137 GFVHKIATFEKAAGFQGLH 155
>05_05_0255 + 23643568-23644761
Length = 397
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 99 YFLHGGFSGLHVIRLLPHP 43
Y + G S L V+RLLPHP
Sbjct: 248 YLVESGKSLLMVVRLLPHP 266
>05_03_0188 +
9417186-9417306,9417418-9417604,9417669-9417801,
9418673-9418752,9421940-9422011,9422211-9422282,
9422361-9422432,9422720-9422791,9423038-9423109,
9423335-9423406,9423497-9423568,9423648-9423722,
9423824-9423895,9424072-9424137,9424223-9424299,
9424642-9425021,9425112-9425310,9425380-9425538,
9425620-9425738,9425942-9426092,9426257-9426488,
9426573-9426723,9426808-9427125
Length = 1007
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/57 (22%), Positives = 26/57 (45%)
Frame = +2
Query: 14 LLVICVLEVIGCGSKRITCNPENPPCKK*VCRRWTKPSYRDHSTSGDVTAGLLGVLS 184
+LV+C +I + +P + RW K + + + SG++ +G+ LS
Sbjct: 18 VLVLCSWRIIAAAQAQPRTDPVEAAALNTILGRWGKTASPEWNISGELCSGVASDLS 74
>06_03_1382 -
29758759-29758806,29758888-29758943,29759901-29760000,
29760107-29760220,29760807-29760854,29760959-29761021,
29761237-29761439,29761518-29761578,29761685-29761790,
29761920-29761987,29762344-29762418,29762507-29762589,
29762788-29762953
Length = 396
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 132 LYDGFVHRLQTYFLHGGFSG 73
L+DG HR++ + LH F G
Sbjct: 325 LFDGQTHRIKKFVLHTNFPG 344
>03_02_0914 -
12351553-12351679,12351966-12352102,12352558-12352653,
12353056-12353989,12354985-12355175
Length = 494
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 123 GFVHRLQTYFLHGGFSGLH 67
GF R ++F HGG GL+
Sbjct: 32 GFAPRANSFFFHGGSEGLY 50
>03_02_0824 + 11556128-11556989,11557515-11559134,11559236-11559825
Length = 1023
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 3 LLFIYW*SACWKSSDAGANVSR 68
LL ++W + WKSS+ G + S+
Sbjct: 600 LLLVHWKISSWKSSEKGTSQSK 621
>01_04_0018 +
15128174-15128316,15128445-15128544,15129573-15129758,
15129877-15129924,15130006-15130209,15130476-15130565,
15130667-15130747,15130827-15130889,15131794-15131832,
15131914-15132000,15132103-15132252,15132331-15132386,
15132493-15132775,15132989-15133132,15133233-15133451,
15133528-15133695,15133868-15133969
Length = 720
Score = 25.4 bits (53), Expect = 6.4
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +2
Query: 11 YLLVICVLEVIGCGSKRITCNPENPPCKK*VCRRWTKPSYRDHSTSGDVTAGLLGV 178
Y+L + E+I ++ I N EN CK +C T+ R +T GLL V
Sbjct: 224 YMLKAALFELIDRRAEEIL-NKENSGCKVLLCDEKTEDLARMFRLFSRITDGLLPV 278
>05_05_0262 - 23666184-23666262,23666564-23667759
Length = 424
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 99 YFLHGGFSGLHVIRLLPHP 43
Y + G S L V+RL+PHP
Sbjct: 247 YLVESGESLLMVVRLVPHP 265
>04_01_0609 +
7966263-7966366,7967945-7968706,7972607-7972851,
7976940-7977107,7977471-7977734,7977962-7978509
Length = 696
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 26 CVLEVIGCGSKRITCNPENPP 88
C L++ G GS ITCN + P
Sbjct: 79 CYLDLPGSGSFSITCNHKTDP 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,644,350
Number of Sequences: 37544
Number of extensions: 94992
Number of successful extensions: 204
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 14,793,348
effective HSP length: 44
effective length of database: 13,141,412
effective search space used: 262828240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -