Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30f01
         (194 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82287-1|CAB05316.1|  366|Caenorhabditis elegans Hypothetical pr...    27   1.4  
AF016447-12|AAG24014.2|  195|Caenorhabditis elegans Hypothetical...    27   1.4  
Z93394-4|CAD59168.1|  193|Caenorhabditis elegans Hypothetical pr...    26   4.3  
Z93394-3|CAD59167.1|  228|Caenorhabditis elegans Hypothetical pr...    26   4.3  
AF016688-4|AAB66075.2|  481|Caenorhabditis elegans Hypothetical ...    26   4.3  
AL117206-8|CAB60449.2|  328|Caenorhabditis elegans Hypothetical ...    25   9.8  

>Z82287-1|CAB05316.1|  366|Caenorhabditis elegans Hypothetical
           protein ZK550.1 protein.
          Length = 366

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = -3

Query: 192 CSRDRTPSKPAVTSPLVL*SLYDGFVHRLQTYFLHGGFSGLHVIRLLP 49
           C   RT ++ AVT+P+    LY  + + +  +F++G  S L +I +LP
Sbjct: 57  CDASRT-ARAAVTTPIGFIFLYFCYGNEIAHFFINGFGSYLLMISVLP 103


>AF016447-12|AAG24014.2|  195|Caenorhabditis elegans Hypothetical
           protein C54F6.12 protein.
          Length = 195

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 120 FVHRLQTYFLHGGFSG 73
           +V+R QTY  HG FSG
Sbjct: 20  YVYRAQTYIFHGKFSG 35


>Z93394-4|CAD59168.1|  193|Caenorhabditis elegans Hypothetical
           protein Y48E1C.4b protein.
          Length = 193

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = -2

Query: 178 DSK*ASSNVTTSTMISV*WLCPSPTNLFLARRILRVTRDTFAPASDDFQHAD 23
           D K  S+  +TST++ V WL    T L L   +    RD      DD Q  D
Sbjct: 41  DQKPTSTAPSTSTLLKVDWLLQKITPLVLKSNV----RDFMDICKDDVQFDD 88


>Z93394-3|CAD59167.1|  228|Caenorhabditis elegans Hypothetical
           protein Y48E1C.4a protein.
          Length = 228

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = -2

Query: 178 DSK*ASSNVTTSTMISV*WLCPSPTNLFLARRILRVTRDTFAPASDDFQHAD 23
           D K  S+  +TST++ V WL    T L L   +    RD      DD Q  D
Sbjct: 41  DQKPTSTAPSTSTLLKVDWLLQKITPLVLKSNV----RDFMDICKDDVQFDD 88


>AF016688-4|AAB66075.2|  481|Caenorhabditis elegans Hypothetical
           protein F18A12.3 protein.
          Length = 481

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 121 LCPSPTNLFLARRILRVTRDTFAPASDDFQHA 26
           LC SP  + L+  +L     +  P  D FQHA
Sbjct: 57  LCESPDCITLSHELLNYQDPSVDPCVDFFQHA 88


>AL117206-8|CAB60449.2|  328|Caenorhabditis elegans Hypothetical
           protein Y67A10A.8 protein.
          Length = 328

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 96  FLHGGFSGLHVIRLLPH 46
           FLHGGF   HV +  P+
Sbjct: 219 FLHGGFENDHVTKWFPN 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,615,522
Number of Sequences: 27780
Number of extensions: 76122
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 12,740,198
effective HSP length: 44
effective length of database: 11,517,878
effective search space used: 230357560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)