Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30f01
(194 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 22 0.58
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 0.58
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 0.58
AB238796-1|BAE93398.1| 128|Apis mellifera Queen brain-selective... 22 0.58
S78459-1|AAB34403.1| 50|Apis mellifera mast cell-degranulating... 21 1.3
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 19 4.1
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 19 4.1
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 19 5.4
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 19 5.4
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 19 7.1
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 19 7.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 18 9.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 18 9.4
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 18 9.4
AB183889-1|BAD86829.1| 316|Apis mellifera Mos protein. 18 9.4
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 22.2 bits (45), Expect = 0.58
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 143 YYDLCMMALSIAYKLI 96
Y+DLCM+ L +A +I
Sbjct: 90 YWDLCMLLLLVANLII 105
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 22.2 bits (45), Expect = 0.58
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 143 YYDLCMMALSIAYKLI 96
Y+DLCM+ L +A +I
Sbjct: 90 YWDLCMLLLLVANLII 105
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 22.2 bits (45), Expect = 0.58
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 143 YYDLCMMALSIAYKLI 96
Y+DLCM+ L +A +I
Sbjct: 90 YWDLCMLLLLVANLII 105
>AB238796-1|BAE93398.1| 128|Apis mellifera Queen brain-selective
protein-1 protein.
Length = 128
Score = 22.2 bits (45), Expect = 0.58
Identities = 6/17 (35%), Positives = 11/17 (64%)
Frame = +2
Query: 41 IGCGSKRITCNPENPPC 91
IGC +++ C+ + PC
Sbjct: 91 IGCSAEKFECSKTSNPC 107
>S78459-1|AAB34403.1| 50|Apis mellifera mast cell-degranulating
peptide protein.
Length = 50
Score = 21.0 bits (42), Expect = 1.3
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +2
Query: 8 FYLLVICVLEVIGCGSKRITCNPENPPCKK*VCRR 112
F+L VI + + I CN + K +CR+
Sbjct: 10 FFLSVILITSYFVTPTMSIKCNCKRHVIKPHICRK 44
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 19.4 bits (38), Expect = 4.1
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -3
Query: 117 VHRLQTYFLHGGFSGLHVI 61
+ R TYF +G S +H I
Sbjct: 117 IWRPDTYFYNGKHSYVHTI 135
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 19.4 bits (38), Expect = 4.1
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 102 TYFLHGGFSGLHVI 61
TYF +G S LH I
Sbjct: 90 TYFYNGKHSYLHTI 103
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 19.0 bits (37), Expect = 5.4
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = -2
Query: 64 DTFAPASDDFQHAD 23
D F PAS + H D
Sbjct: 486 DLFGPASPAYVHED 499
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 19.0 bits (37), Expect = 5.4
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -2
Query: 67 RDTFAPASDDFQHAD 23
R TF P + D +H D
Sbjct: 163 RTTFEPRATDSRHYD 177
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 18.6 bits (36), Expect = 7.1
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +2
Query: 116 TKPSYRDHSTSGDVTAG 166
+ PSY S SGD G
Sbjct: 1052 SNPSYNFSSVSGDGEEG 1068
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 18.6 bits (36), Expect = 7.1
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +2
Query: 116 TKPSYRDHSTSGDVTAG 166
+ PSY S SGD G
Sbjct: 1048 SNPSYNFSSVSGDGEEG 1064
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 18.2 bits (35), Expect = 9.4
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -3
Query: 102 TYFLHGGFSGLHVIRLLPHPMTS 34
TY ++ G H RLL ++S
Sbjct: 43 TYIIYESLCGRHEKRLLNELLSS 65
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 18.2 bits (35), Expect = 9.4
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -3
Query: 102 TYFLHGGFSGLHVIRLLPHPMTS 34
TY ++ G H RLL ++S
Sbjct: 43 TYIIYESLCGRHEKRLLNELLSS 65
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 18.2 bits (35), Expect = 9.4
Identities = 5/10 (50%), Positives = 8/10 (80%)
Frame = +3
Query: 111 DGQSHHTEII 140
DG+ HH +I+
Sbjct: 1036 DGKEHHLQIM 1045
>AB183889-1|BAD86829.1| 316|Apis mellifera Mos protein.
Length = 316
Score = 18.2 bits (35), Expect = 9.4
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3
Query: 132 LYDGFVHRLQTYFLHGGF 79
L DGF + T+ GGF
Sbjct: 61 LKDGFPIKCGTFLGSGGF 78
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,669
Number of Sequences: 438
Number of extensions: 1111
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used: 2541420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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