Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30e24
         (578 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   1.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   1.4  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   4.3  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   7.6  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 246 GDNTSSSTYVDLDEF 290
           GD+TSS+T +DL  F
Sbjct: 21  GDSTSSATSIDLSTF 35


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 246 GDNTSSSTYVDLDEF 290
           GD+TSS+T +DL  F
Sbjct: 21  GDSTSSATSIDLSTF 35


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 370 RPSAGPNAEPPRCVLPRPSPGMPXSDRNSS 281
           RP + P+A+  + V   P PG    ++++S
Sbjct: 414 RPPSTPSADGSKPVQTTPKPGQWVPEKSTS 443


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = -2

Query: 370 RPSAGPNAEPPRCVLPRPSPGMPXSDRNSSRSTY 269
           RPS+G +    R   P    G P ++    R+ +
Sbjct: 202 RPSSGRSPRTRRVKKPGAKQGAPTAEEKRPRTAF 235


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,133
Number of Sequences: 336
Number of extensions: 1582
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)