Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30e24
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    27   2.6  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    26   3.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   6.1  

>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 367 PSAGPNAEPPRCVLPRPSPGMPXSDRNSSRSTYVDEDVLS 248
           P++ P+  P     P P+P +  +    SR T   ED+LS
Sbjct: 356 PTSIPSVVPANISSPNPNPTLAPNPTGPSRVTSGTEDLLS 395


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +3

Query: 276 DLDEFLSXNGMPGEGLGSTHLGGSAFGPALGLQTPITKRERSPSPSDCMSPDTINPXL 449
           ++ EF + +G+P +GL    +   +   A       ++ E    PSD    D INP L
Sbjct: 61  EMREFFNFDGLPDQGLNLPSIAPPSLSHASSPNLSNSQDEAECLPSD-RQQDYINPSL 117


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +3

Query: 255 TSSSTYVDLDEFLSXNGMPGEGLGSTHLGGSAFGPALGLQTPITKRERSPSPSDCMSPDT 434
           +SSS+       LS +      + ST L GS+  P+    TP +    SP  S   S  +
Sbjct: 485 SSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSS 544

Query: 435 INPXLSPAD--STFSMASSG 488
           I P  S +D  S+ +  SSG
Sbjct: 545 I-PTSSSSDFSSSITTISSG 563


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,580,526
Number of Sequences: 5004
Number of extensions: 25037
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)