Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30e24
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0779 - 19507771-19507992,19508678-19508990,19509235-195092...    29   2.0  
11_06_0610 - 25449085-25453284                                         29   3.5  
12_01_0592 + 4848467-4849164,4849413-4849491                           28   6.2  
05_02_0042 - 5927804-5928085,5928193-5928315                           28   6.2  
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298...    28   6.2  
04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154     27   8.2  
04_01_0610 - 7997406-7998047,7998379-7998426,8000719-8001143,800...    27   8.2  
02_04_0373 - 22453074-22453358,22453590-22453715                       27   8.2  

>04_03_0779 -
           19507771-19507992,19508678-19508990,19509235-19509296,
           19509845-19509904,19510260-19510367,19510452-19510561,
           19510656-19510701,19510812-19510884,19510970-19511100,
           19511270-19511356,19511871-19511968,19512849-19512971,
           19513091-19513286
          Length = 542

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 357 PALGLQTPITKRERSPSPSDCMSPDTINPXLS-PADSTFSMASS 485
           P   L  P  +R RSPSPS   S    NP  S PA++  + A++
Sbjct: 29  PLAALAAPRRRRRRSPSPSPAPSDSDSNPASSAPANAGGAAAAA 72


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +3

Query: 393  ERSPSPSDCMSPDTINPXLSPADSTFSMASSGRDFDPRXRAFSDEELKPQP-MIXXSRKQ 569
            E+SP P +  SP T+ P +SP     S  S   +        S+    P P     S ++
Sbjct: 871  EKSPPPPETKSPPTLTPEISPPPEGKSPPSHTPESSSPPSKESEPPPTPTPKSSPPSHEE 930

Query: 570  FVP 578
            +VP
Sbjct: 931  YVP 933


>12_01_0592 + 4848467-4849164,4849413-4849491
          Length = 258

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 367 PSAGPNAEPPRCVLPRPSPGMPXSDRNSSRSTYVDE 260
           PS  P+AE      PR +P      R SS S  +DE
Sbjct: 26  PSPSPHAELGPIARPRDAPHRHGHQRTSSESVLIDE 61


>05_02_0042 - 5927804-5928085,5928193-5928315
          Length = 134

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = -2

Query: 55 GGARGHATGVRGD 17
          GGARGHA G RGD
Sbjct: 3  GGARGHADGQRGD 15


>01_01_0386 -
           2985563-2985986,2986301-2986390,2986529-2986668,
           2986798-2986893,2987003-2987042,2987760-2987887
          Length = 305

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +3

Query: 372 QTPITKRERSPSPSDCMSPDTINPXLSPAD---STFSMASSGRDFDPR 506
           ++P     RSP+P D  SP   +   SPAD      S A++GR   PR
Sbjct: 241 RSPTPNASRSPAPRDSRSPMRADSR-SPADHERRDMSTAANGRSPSPR 287


>04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154
          Length = 520

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 376 VCRPSAGP-NAEPPRCVLPRPSPGMPXSDRNSSRSTYV 266
           V RP A P N  PP  + PRP+   P +  NS   T V
Sbjct: 325 VQRPQARPFNNVPPTPLRPRPATAAPTNSGNSFDRTLV 362


>04_01_0610 -
           7997406-7998047,7998379-7998426,8000719-8001143,
           8002301-8002589
          Length = 467

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -2

Query: 373 CRPSAGPNAEP--PRCVLPRPSPGMP 302
           C P++ P+  P  P C+L +P+  MP
Sbjct: 74  CMPASSPSFSPASPSCILAQPNQAMP 99


>02_04_0373 - 22453074-22453358,22453590-22453715
          Length = 136

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 412 EGEGERSRLVMGVCRPSAGPNAEPPR 335
           EG+GER R  +  C P A P  +  R
Sbjct: 12  EGDGERGRRRVEACTPGAAPRTDRTR 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,643,542
Number of Sequences: 37544
Number of extensions: 246982
Number of successful extensions: 1143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)