Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30e24
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.        30   1.4  
U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryo...    30   1.4  
U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryo...    30   1.4  
U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryo...    30   1.4  
AC006672-7|AAM98004.1|  668|Caenorhabditis elegans Hypothetical ...    28   4.2  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    27   7.3  

>U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.
          Length = 1379

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +3

Query: 381 ITKRERSPSPSDCMSPDTINPXLSPADSTFSMASSGRD 494
           IT    SPSPS  MS  T    L P+ +T   +SSG D
Sbjct: 771 ITVDASSPSPSSRMSSHTAPDSLLPSPATRGTSSSGAD 808


>U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform c protein.
          Length = 1340

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +3

Query: 381 ITKRERSPSPSDCMSPDTINPXLSPADSTFSMASSGRD 494
           IT    SPSPS  MS  T    L P+ +T   +SSG D
Sbjct: 735 ITVDASSPSPSSRMSSHTAPDSLLPSPATRGTSSSGAD 772


>U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform a protein.
          Length = 1376

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +3

Query: 381 ITKRERSPSPSDCMSPDTINPXLSPADSTFSMASSGRD 494
           IT    SPSPS  MS  T    L P+ +T   +SSG D
Sbjct: 771 ITVDASSPSPSSRMSSHTAPDSLLPSPATRGTSSSGAD 808


>U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform b protein.
          Length = 1379

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +3

Query: 381 ITKRERSPSPSDCMSPDTINPXLSPADSTFSMASSGRD 494
           IT    SPSPS  MS  T    L P+ +T   +SSG D
Sbjct: 771 ITVDASSPSPSSRMSSHTAPDSLLPSPATRGTSSSGAD 808


>AC006672-7|AAM98004.1|  668|Caenorhabditis elegans Hypothetical
           protein K08D12.6 protein.
          Length = 668

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/48 (22%), Positives = 25/48 (52%)
 Frame = +3

Query: 402 PSPSDCMSPDTINPXLSPADSTFSMASSGRDFDPRXRAFSDEELKPQP 545
           P+P+   +PD      +PA +  + A++   +  +  ++ DE++ P P
Sbjct: 254 PAPAPVAAPDVECGSAAPAPAAAAPAATDSGYRSKRNSYGDEQVTPAP 301


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +3

Query: 291  LSXNGMPGEGLGSTHLGGSAFGPALGLQTPITKRERSPSPSDCMSPDTINP 443
            +  +GM   G+G T +  S  G  +G Q   +++ + P  S   +   +NP
Sbjct: 3309 MGQSGMGQSGMGQTGMSRSGLGGGIGQQGQQSQQPQQPQVSQQQNQRGMNP 3359


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,377,421
Number of Sequences: 27780
Number of extensions: 167514
Number of successful extensions: 652
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)