Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30e24
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   3.8  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   3.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   3.8  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   8.8  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 400 ERSRLVMGVCRPSAG 356
           ER++ VMG C P++G
Sbjct: 105 ERAQSVMGKCLPTSG 119


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 400 ERSRLVMGVCRPSAG 356
           ER++ VMG C P++G
Sbjct: 105 ERAQSVMGKCLPTSG 119


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 468 TWNRLVKAXG*WCPGSCSRRARESAP 391
           TW  LV   G  C G  S   RE++P
Sbjct: 3   TWLLLVVCLGIACQGITSVTVRENSP 28


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 375 TPITKRERSPSPSDCM 422
           TP  K+ + P P++C+
Sbjct: 26  TPRRKKNKKPLPTECV 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,654
Number of Sequences: 438
Number of extensions: 2367
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)