Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30e21
(743 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 322 2e-89
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 155 6e-39
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 152 4e-38
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 143 2e-35
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 129 4e-31
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 109 5e-25
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 99 6e-22
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 88 1e-18
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 87 2e-18
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 84 2e-17
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 81 2e-16
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 80 4e-16
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 79 7e-16
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 75 1e-14
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 75 1e-14
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 72 1e-13
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 71 2e-13
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 71 2e-13
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 63 5e-11
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 59 6e-10
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 39 9e-04
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch... 35 0.011
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 34 0.019
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 33 0.057
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 33 0.057
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 32 0.099
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 31 0.13
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 31 0.13
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 31 0.13
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 31 0.17
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 31 0.23
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 31 0.23
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 29 0.70
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 28 1.2
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 27 2.1
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 27 2.8
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.7
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 3.7
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 4.9
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 4.9
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 26 6.5
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 26 6.5
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 26 6.5
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 26 6.5
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 25 8.6
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 322 bits (792), Expect = 2e-89
Identities = 152/208 (73%), Positives = 176/208 (84%)
Frame = +2
Query: 119 EGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVV 298
E YY KI++ +L + +K+QNLRRL+AQRN LNA+VR+LR GSYVGEV+
Sbjct: 14 ENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVI 73
Query: 299 KPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSL 478
K M K KVLVKVHPEGK+VVD+ ++DI ++ N RVALRN+SY L KILPNKVDPLVSL
Sbjct: 74 KTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSL 133
Query: 479 MMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 658
MMVEK+PDSTYEMVGGL+KQIKEIKEVIELPVKHPELF++LGI QPKG+LLYGPPGTGKT
Sbjct: 134 MMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKT 193
Query: 659 LLARAVAHHTECTFIRVSGSELVQKFIG 742
LLARAVAHHT+C FIRVSGSELVQK+IG
Sbjct: 194 LLARAVAHHTDCKFIRVSGSELVQKYIG 221
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 155 bits (376), Expect = 6e-39
Identities = 77/156 (49%), Positives = 107/156 (68%)
Frame = +2
Query: 275 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPN 454
G +GEV+K +D ++ +VK ++VV NVD + + RV+L + T+ +ILP
Sbjct: 53 GQIIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPR 112
Query: 455 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 634
+VDPLV M +E D ++ VGGL++QI+E++EVIELP+K+PELF +GI PKGVLLY
Sbjct: 113 EVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLY 172
Query: 635 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIG 742
GPPGTGKTLLARAVA F++V S +V K+IG
Sbjct: 173 GPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIG 208
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 152 bits (369), Expect = 4e-38
Identities = 73/145 (50%), Positives = 96/145 (66%)
Frame = +2
Query: 308 DKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMV 487
+K ++ + KFVV L + V D+ RV Y + LP K+DP V++M V
Sbjct: 111 EKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQV 170
Query: 488 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 667
E+ PD TY VGG +QI+ ++EV+ELP+ PE F LGI PKG++LYGPPGTGKTL A
Sbjct: 171 EEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCA 230
Query: 668 RAVAHHTECTFIRVSGSELVQKFIG 742
RAVA+ T+ TFIRV GSELVQK++G
Sbjct: 231 RAVANRTDATFIRVIGSELVQKYVG 255
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 143 bits (347), Expect = 2e-35
Identities = 75/199 (37%), Positives = 120/199 (60%)
Frame = +2
Query: 146 KIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 325
+I + L+ E QN RL+ Q + + G+ + E++ D ++
Sbjct: 74 RIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVGT-LEEIID--DDHAIV 130
Query: 326 VKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDS 505
PE + V + VD + + C V L +++ ++ +L + DP++++M ++K P
Sbjct: 131 STAGPE--YYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTE 188
Query: 506 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 685
+Y +GGL+ QI+EIKE +ELP+ HPEL++ +GI PKGV+LYG PGTGKTLLA+AVA+
Sbjct: 189 SYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 248
Query: 686 TECTFIRVSGSELVQKFIG 742
T TF+RV GSEL+QK++G
Sbjct: 249 TSATFLRVVGSELIQKYLG 267
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 129 bits (312), Expect = 4e-31
Identities = 63/153 (41%), Positives = 97/153 (63%)
Frame = +2
Query: 284 VGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVD 463
+G+ ++ +D+ +V +VV + +D + + VAL+ S L ILP + D
Sbjct: 58 IGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEAD 117
Query: 464 PLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 643
+S++ ++ PD +Y VGGLD Q +E++E +ELP+ +L+ +GI P+GVLLYGPP
Sbjct: 118 SSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPP 177
Query: 644 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIG 742
GTGKT+L +AVA+ T FIRV GSE VQK++G
Sbjct: 178 GTGKTMLVKAVANSTAANFIRVVGSEFVQKYLG 210
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 109 bits (261), Expect = 5e-25
Identities = 54/143 (37%), Positives = 83/143 (58%)
Frame = +2
Query: 314 KKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEK 493
K ++K + L V+ ++ + + +SY + LP++ D V M V++
Sbjct: 119 KSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDE 178
Query: 494 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 673
P Y +GGL KQI+E+ E I LP++ + F LG+ PKG L++GPPGTGKTLLARA
Sbjct: 179 KPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLLARA 238
Query: 674 VAHHTECTFIRVSGSELVQKFIG 742
A + TF++++ +LVQ FIG
Sbjct: 239 CAAQSNATFLKLAAPQLVQMFIG 261
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 99.1 bits (236), Expect = 6e-22
Identities = 39/78 (50%), Positives = 61/78 (78%)
Frame = +2
Query: 509 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 688
Y+ +GG +Q+ +I+E++ELP++HP+LF ++GI P+G+L+YGPPGTGKTL+ARAVA+ T
Sbjct: 223 YDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVANET 282
Query: 689 ECTFIRVSGSELVQKFIG 742
F ++G E++ K G
Sbjct: 283 GAFFFLINGPEIMSKMAG 300
Score = 90.6 bits (215), Expect = 2e-19
Identities = 52/154 (33%), Positives = 87/154 (56%)
Frame = +2
Query: 281 YVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKV 460
YVG + + + + ++ E ++DLD++ +V + V + N + L P+ +
Sbjct: 426 YVGSDLASLCSEAAMQQIR-EKMDMIDLDEDEIDAEVLDSLGVTMDNFRFALGSSNPSAL 484
Query: 461 DPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGP 640
V VE VP+ +E +GGL++ +E++E +++PV + E F G+ KGVL +GP
Sbjct: 485 RETV----VE-VPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGP 539
Query: 641 PGTGKTLLARAVAHHTECTFIRVSGSELVQKFIG 742
PGTGKTLLA+A+A+ FI V G EL+ + G
Sbjct: 540 PGTGKTLLAKAIANECSANFISVKGPELLSMWFG 573
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 88.2 bits (209), Expect = 1e-18
Identities = 37/79 (46%), Positives = 53/79 (67%)
Frame = +2
Query: 506 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 685
T+ +GGL QI +I++++ELP ++PELF I P+GVLLYGPPGTGKT++ RAVA
Sbjct: 277 TFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRAVAAE 336
Query: 686 TECTFIRVSGSELVQKFIG 742
+ G +V K++G
Sbjct: 337 ANAQVFTIDGPSVVGKYLG 355
Score = 85.0 bits (201), Expect = 1e-17
Identities = 38/82 (46%), Positives = 53/82 (64%)
Frame = +2
Query: 497 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 676
P+ + +GG ++ +++KE +E P+ H E F LG+ PKGVLLYGPPG KT+ A+A+
Sbjct: 543 PNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTITAKAI 602
Query: 677 AHHTECTFIRVSGSELVQKFIG 742
A T FI V G EL KF+G
Sbjct: 603 ATETGLNFIAVKGPELFDKFVG 624
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 87.0 bits (206), Expect = 2e-18
Identities = 41/96 (42%), Positives = 60/96 (62%)
Frame = +2
Query: 455 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 634
KV P VP ++ +G L E++ I P+K PEL+ ++GI+ P GVLL+
Sbjct: 473 KVQPSSKREGFATVPGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLW 532
Query: 635 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIG 742
GPPG GKTLLA+AVA+ ++ FI + G EL+ K++G
Sbjct: 533 GPPGCGKTLLAKAVANESKANFISIRGPELLNKYVG 568
Score = 81.8 bits (193), Expect = 9e-17
Identities = 37/85 (43%), Positives = 53/85 (62%)
Frame = +2
Query: 488 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 667
E D + +GGLD I E+ E++ +P+KHPE++ GI P+GVLL+GPPG GKT+LA
Sbjct: 166 EPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGCGKTMLA 225
Query: 668 RAVAHHTECTFIRVSGSELVQKFIG 742
A+A+ FI +S +V G
Sbjct: 226 NALANELGVPFISISAPSIVSGMSG 250
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 83.8 bits (198), Expect = 2e-17
Identities = 39/100 (39%), Positives = 68/100 (68%), Gaps = 3/100 (3%)
Frame = +2
Query: 452 NKVDPLV-SLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALG--IAQPKG 622
N+ + +V S +++ D +++ +GG+D+ + ++ + + P+K+PE+FD G ++ PKG
Sbjct: 68 NEYEQIVASQLVLPSEIDVSFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKG 127
Query: 623 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIG 742
+LLYGPPG GKT+LA+A+A ++ TFI VS L K+ G
Sbjct: 128 LLLYGPPGCGKTMLAKALAKQSQATFINVSVGLLTDKWFG 167
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 80.6 bits (190), Expect = 2e-16
Identities = 36/83 (43%), Positives = 55/83 (66%)
Frame = +2
Query: 494 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 673
VP ++ +GGL++ +++ ++LP++ PELF G+ GVLLYGPPGTGKTLLA+A
Sbjct: 649 VPKVNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPRSGVLLYGPPGTGKTLLAKA 707
Query: 674 VAHHTECTFIRVSGSELVQKFIG 742
VA F+ + G EL+ ++G
Sbjct: 708 VATELSLEFVSIKGPELLNMYVG 730
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 79.8 bits (188), Expect = 4e-16
Identities = 41/92 (44%), Positives = 60/92 (65%)
Frame = +2
Query: 467 LVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPG 646
L S ++VEK P+ ++ + GL+ + +KE + LP+K P+LF G G+LLYGPPG
Sbjct: 115 LTSAILVEK-PNVRWDDIAGLENAKEALKETVLLPIKLPQLFSH-GRKPWSGILLYGPPG 172
Query: 647 TGKTLLARAVAHHTECTFIRVSGSELVQKFIG 742
TGK+ LA+AVA TF +S S+LV K++G
Sbjct: 173 TGKSYLAKAVATEAGSTFFSISSSDLVSKWMG 204
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 79.0 bits (186), Expect = 7e-16
Identities = 35/84 (41%), Positives = 57/84 (67%), Gaps = 5/84 (5%)
Frame = +2
Query: 506 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA-- 679
++E VGGLD I ++KE++ LP+ +PE+F + P+GVL +GPPGTGKTL+ARA+A
Sbjct: 264 SFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARALAAA 323
Query: 680 ---HHTECTFIRVSGSELVQKFIG 742
+ + +F G++ + K++G
Sbjct: 324 CSSENKKVSFYMRKGADCLSKWVG 347
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 74.9 bits (176), Expect = 1e-14
Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Frame = +2
Query: 518 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTEC 694
+ GLD +KE + P PELF G+ +P +G+LL+GPPGTGKT+LARAVA +
Sbjct: 381 IAGLDDAKNSLKEAVIYPFLRPELFQ--GLREPVQGMLLFGPPGTGKTMLARAVATEAKA 438
Query: 695 TFIRVSGSELVQKFIG 742
TF +S S L K++G
Sbjct: 439 TFFSISASSLTSKYLG 454
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 74.5 bits (175), Expect = 1e-14
Identities = 34/75 (45%), Positives = 51/75 (68%)
Frame = +2
Query: 518 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 697
V G+D+ +EI E ++ +K+P+ ++ LG P+G +L GPPGTGKTLLA+A A
Sbjct: 298 VAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAGEANVP 356
Query: 698 FIRVSGSELVQKFIG 742
F+ VSGSE ++ F+G
Sbjct: 357 FLSVSGSEFLEMFVG 371
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 71.7 bits (168), Expect = 1e-13
Identities = 34/83 (40%), Positives = 55/83 (66%), Gaps = 5/83 (6%)
Frame = +2
Query: 509 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA--- 679
+ +GGL+ I ++KE++ LP+ +PE+F L I P+GVL +GPPGTGKTL+AR +A
Sbjct: 371 FNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVLFHGPPGTGKTLMARVLAANC 430
Query: 680 --HHTECTFIRVSGSELVQKFIG 742
+ + +F GS+ + K++G
Sbjct: 431 STKNQKISFFLRKGSDCLSKWVG 453
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 70.9 bits (166), Expect = 2e-13
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +2
Query: 509 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHH 685
++ + GL+ +KE + P P+LF G+ +P +G+LL+GPPGTGKT+LARAVA
Sbjct: 458 WDDISGLEFAKHSLKEAVVYPFLRPDLFQ--GLREPARGMLLFGPPGTGKTMLARAVATE 515
Query: 686 TECTFIRVSGSELVQKFIG 742
+ F +S S L KF+G
Sbjct: 516 SRSVFFSISASSLTSKFLG 534
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 70.5 bits (165), Expect = 2e-13
Identities = 35/87 (40%), Positives = 55/87 (63%)
Frame = +2
Query: 482 MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 661
M E+ + + V G+D+ +E++E+++ ++ P F LG P+GVLL GPPGTGKT+
Sbjct: 257 MEERAINVRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLPRGVLLTGPPGTGKTM 315
Query: 662 LARAVAHHTECTFIRVSGSELVQKFIG 742
LARAVA F +SGS+ + ++G
Sbjct: 316 LARAVAGEANVPFFFMSGSQFDEMYVG 342
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 62.9 bits (146), Expect = 5e-11
Identities = 27/75 (36%), Positives = 46/75 (61%)
Frame = +2
Query: 518 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 697
+ G+ + + ++++IE PVK+ ++ + P G+LL+G PG GKT LA A++
Sbjct: 608 IAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLFGYPGCGKTYLASAISSTFPVQ 667
Query: 698 FIRVSGSELVQKFIG 742
FI + G EL+ K+IG
Sbjct: 668 FISIKGPELLDKYIG 682
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 59.3 bits (137), Expect = 6e-10
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Frame = +2
Query: 518 VGGLDKQIKEI-KEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 694
+GGLD + I + + P + + LGI KG+LLYGPPGTGKTL+AR +
Sbjct: 271 IGGLDSEFSAIFRRAFASRLFPPGMVEKLGINHVKGILLYGPPGTGKTLIARQIGKMLNA 330
Query: 695 TFIR-VSGSELVQKFIG 742
+ V+G E++ K++G
Sbjct: 331 REPKIVNGPEILNKYVG 347
Score = 29.9 bits (64), Expect = 0.40
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 623 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 721
VLL GP +GKT LA +A +E F+++ +E
Sbjct: 588 VLLSGPIASGKTALAATIALGSEFPFVKLVSAE 620
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 38.7 bits (86), Expect = 9e-04
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +2
Query: 527 LDKQIKE-IKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 679
L+ +K+ I + + +++ + +D GI +G LLYGPPG+GKT A+A
Sbjct: 212 LESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALA 263
>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 35.1 bits (77), Expect = 0.011
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +2
Query: 521 GGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP-GTGKTLLARAVAHHTECT 697
G L QI+E+ I P+K + DA + YG P G L V +HTE
Sbjct: 266 GSLRTQIEELAASINFPLKKLYVIDASRRSTHSNAFFYGLPWNKGIVLFDTLVKNHTEPE 325
Query: 698 FIRVSGSEL 724
I + G EL
Sbjct: 326 LIAILGHEL 334
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 34.3 bits (75), Expect = 0.019
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 623 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGS 718
++L+G GTGKT LAR +A T+ FI +S +
Sbjct: 123 MILWGSAGTGKTTLARLIAVTTKSRFIEISAT 154
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 32.7 bits (71), Expect = 0.057
Identities = 32/97 (32%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Frame = +2
Query: 464 PLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK----GVLL 631
P+ L EK E V L KQ+ E + L A G++ P L
Sbjct: 563 PVTRLKTTEKERLLNMEKV--LSKQVIGQNEAVTAVANAIRLSRA-GLSDPNQPIASFLF 619
Query: 632 YGPPGTGKTLLARAVA---HHTECTFIRVSGSELVQK 733
GP GTGKTLL +A+A E IR+ SE ++K
Sbjct: 620 CGPSGTGKTLLTKALASFMFDDENAMIRIDMSEYMEK 656
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 32.7 bits (71), Expect = 0.057
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +2
Query: 527 LDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 706
LD+ +K+V + ++ + G Q K + L GPPG GKT + +++A F R
Sbjct: 542 LDRDHYGLKDVKDRVLELVAVGKLRGTMQGKIMCLVGPPGVGKTSVGKSIASALNREFFR 601
Query: 707 VS 712
S
Sbjct: 602 FS 603
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 31.9 bits (69), Expect = 0.099
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +2
Query: 617 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 724
+ +L+ GPP TGKT +A +A ++ F+ +S SE+
Sbjct: 66 RAILMAGPPSTGKTAIAMGMAQSLGSDTPFVTLSASEV 103
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 617 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 721
K +LL G PG GKT L A+A T +R++ S+
Sbjct: 1560 KPILLEGSPGVGKTSLITALARETGHQLVRINLSD 1594
Score = 30.3 bits (65), Expect = 0.30
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 623 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL--VQKFIG 742
+L+ GP +GKT + VA T F+R++ E +Q++IG
Sbjct: 897 ILIQGPTSSGKTSMIEYVAKKTGHKFVRINNHEHTDLQEYIG 938
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 605 IAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 721
+ Q + +LL GP G GK L +A IR+ S+
Sbjct: 149 LVQKRPILLAGPEGIGKKFLITQIAAKLGQQIIRIHLSD 187
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 31.5 bits (68), Expect = 0.13
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 500 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGI-AQPKGVLLYGPPGTGKTLLARAV 676
DS G + I +K++ K P L +L + PKG+ LYG G GKT L
Sbjct: 80 DSMPAEKGSILSWISPLKKMFSRK-KSPTLTSSLPVPGMPKGIYLYGDVGCGKTALMDLF 138
Query: 677 AHH 685
H+
Sbjct: 139 YHN 141
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +2
Query: 602 GIAQPKGVLLYGPPGTGKTLLARAVA 679
G+ K VLL GPPG GKT A VA
Sbjct: 405 GLGLYKAVLLSGPPGIGKTTAAHLVA 430
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 31.1 bits (67), Expect = 0.17
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 626 LLYGPPGTGKTLLARAVAHH 685
L+ GPPGTGKT+ + +V +H
Sbjct: 411 LIQGPPGTGKTVTSASVVYH 430
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 30.7 bits (66), Expect = 0.23
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 623 VLLYGPPGTGKTLLARAVAHHTE 691
+++ G PGTGKT LA VA TE
Sbjct: 11 IIICGTPGTGKTTLAEQVAETTE 33
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 30.7 bits (66), Expect = 0.23
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 617 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 724
KGVL G GTGKT LA A+A + F + GSE+
Sbjct: 65 KGVLFAGGAGTGKTALALAIAQELGPKVPFCPMVGSEV 102
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 29.1 bits (62), Expect = 0.70
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 614 PKGVLLYGPPGTGK-TLLARAVAHHTECTFIRVSG 715
P V + GPPGTGK TL+ V +++ T +++G
Sbjct: 74 PVIVAVMGPPGTGKSTLIKSLVRRYSKYTISQITG 108
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 623 VLLYGPPGTGKTLLARAVA 679
+L YGPPGTGKT A A
Sbjct: 59 MLFYGPPGTGKTSTILACA 77
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 626 LLYGPPGTGKTLLARAVAH---HTECTFIRVSGSELVQK 733
L GP G GKT L +A+A T+ IR SE +K
Sbjct: 536 LFLGPTGVGKTALTKALAEFLFDTDKAMIRFDMSEFQEK 574
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 623 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 721
++L G G GKT LA +AH + ++ S+
Sbjct: 419 MMLTGLAGAGKTTLAHVIAHQAGYKVLEINASD 451
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 497 PDSTYEMVGGLDKQIKEIKEV 559
P +YE++ GLDKQ + K+V
Sbjct: 18 PKESYELLHGLDKQYQSTKDV 38
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 390 TSLISTFLSKSTTNLPSG*TFTRTFFLSIGLTT 292
TS+IS+ S S T++PS + +FF + G T+
Sbjct: 822 TSIISSIASSSYTSIPSISSIASSFFDASGFTS 854
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 26.2 bits (55), Expect = 4.9
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Frame = +2
Query: 368 KNVDINDVTANCRVA---LRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQ 538
+++D+ + N R L N + +L + K L L + +++ D+ +
Sbjct: 1202 ESIDLQEYAPNIRFTAQKLFNATTSLREFAALK--SLRHLPLSQRILDANVTRLPSNFTD 1259
Query: 539 IKEIKEVIELPVKHPELFDALGIAQPKG-VLLYGPPGTGKT 658
K+ K + V P+ + + G L+ GPPGTGKT
Sbjct: 1260 DKKQKIMKSYGVNEPQAYAIYASSVNDGFTLIQGPPGTGKT 1300
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +2
Query: 626 LLYGPPGTGKT 658
L++GPPGTGKT
Sbjct: 229 LIHGPPGTGKT 239
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 635 GPPGTGKTLLARAVAHHTECTFIRVS 712
G PGTGKT+L V H + +V+
Sbjct: 199 GAPGTGKTVLLHNVLDHVVSDYPKVN 224
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 152 EELQLIVAEKSQNLRRLQAQ 211
EEL+LI K ++ RRLQAQ
Sbjct: 275 EELELIAERKRESGRRLQAQ 294
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 626 LLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 733
++ GP G+GKT +A+AV+ + F + G +L K
Sbjct: 18 VVIGPAGSGKTTMAKAVSE--KLGFEYIEGDDLHPK 51
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +1
Query: 442 NTTQQSRSSCVAHDGRESAGLYLRNGRWSRQTNQGD 549
N+T + SS A+ +S+G ++ NG+ + + G+
Sbjct: 233 NSTSKVMSSASANKPSKSSGFHINNGKSKEEKSHGE 268
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 617 KGVLLYGPPGTGK-TLLARAVAHH 685
K V+++GP G GK TLL R + H
Sbjct: 19 KPVVVFGPSGVGKSTLLKRLLKDH 42
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,234
Number of Sequences: 5004
Number of extensions: 56299
Number of successful extensions: 238
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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