Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30e19
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82078-6|CAB04946.1|  257|Caenorhabditis elegans Hypothetical pr...    62   4e-10
AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z81475-4|CAB03911.1|  323|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z82078-6|CAB04946.1|  257|Caenorhabditis elegans Hypothetical
           protein W09D6.5 protein.
          Length = 257

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
 Frame = +3

Query: 6   RKKMANRIGRGVPEVTDAYSKKCSCNREKATVFCRSCGFYCNGRIRLKCQQHPRVTFLLD 185
           +K   +R     P +  +  K+C C+R+   V C+ CG+ C GR+++ C +HP +  L D
Sbjct: 153 QKYSMSRPNAFAPMIAQSDEKECICDRKNTHVVCKRCGYECVGRVQVTCGKHPLILALND 212

Query: 186 ISECPK--CHSSVFLD 227
           + ECP   CHS   L+
Sbjct: 213 LRECPNPVCHSVQLLE 228


>AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical
           protein Y59E9AL.4 protein.
          Length = 1100

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/64 (34%), Positives = 29/64 (45%)
 Frame = -1

Query: 502 NCQVNFFMLKTIKIYCYVKKIAL*INFNYLLSILSWLFWLTRLPTTDLN*YK*TDYTKNI 323
           N +V F+   T K      K+ L   F YLLS+L   F    +  TDL  Y     T N 
Sbjct: 195 NTRVPFYYYNTEKKQIVSTKVRLFGQFPYLLSMLFVWFICFIMTITDLEPYNGAARTDNN 254

Query: 322 VTII 311
           VT++
Sbjct: 255 VTMM 258


>Z81475-4|CAB03911.1|  323|Caenorhabditis elegans Hypothetical
           protein C24H11.4 protein.
          Length = 323

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 260 SFYNHFLCT*FL-IKTHLYYSYNIFC 334
           +FYN FLCT  L I   +YY Y++ C
Sbjct: 95  NFYNLFLCTTNLSILLSMYYRYSLIC 120


>U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical
           protein F02E8.5 protein.
          Length = 578

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 605 WSHCGHPQCVSRDLFCH 655
           WS C HP CV+  +F H
Sbjct: 12  WSRCVHPSCVAWVIFIH 28


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,147,455
Number of Sequences: 27780
Number of extensions: 407592
Number of successful extensions: 932
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)