Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30e18
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...   134   1e-32
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    29   1.00 
SPBC6B1.12c |sus1||SAGA complex subunit Sus1 |Schizosaccharomyce...    28   1.3  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    27   2.3  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   3.0  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   4.0  

>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score =  134 bits (324), Expect = 1e-32
 Identities = 68/169 (40%), Positives = 100/169 (59%), Gaps = 2/169 (1%)
 Frame = +2

Query: 281 MKIGTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKR 460
           +KI TH G FH DE LA +ML+ L ++  A+I+R+RD   L+ CDI+VDVG  +D   K 
Sbjct: 5   VKIATHSGTFHADEALAVYMLRRLDRFSGAQIVRSRDPQVLDSCDIIVDVGGKYD-GIKY 63

Query: 461 YDHHQAGFNETLSTLRPELGGSYKIKLSSAGLVYAYYGEDIIQQLKEESTSLTNEDLKLI 640
           +DHHQ  FN+T S         Y  +LSSAGL+Y ++G ++I  +  +   +  +DL+ +
Sbjct: 64  FDHHQREFNDTFSP-------KYSTRLSSAGLIYKHFGREVIHAVLPQ-LKINEQDLETL 115

Query: 641 YKKVYESFIQEIDAIDNGIPMTEE--QPKYDIHTHLSNRVKRLNPEWNS 781
           Y+KVY+SF++ +DA DNGI       +P +     L   V    P WNS
Sbjct: 116 YEKVYQSFVEGLDANDNGISAYPAGLKPSFKAAMSLPEMVSSFLPAWNS 164


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
 Frame = +2

Query: 485 NETLSTLRPELGGSYKIKLSSAGLVYAYYGEDIIQQLK-EESTS------LTNEDLKLIY 643
           NE +    PEL  S  I  SS       + ED++ +   EESTS      L      L Y
Sbjct: 641 NEEMVIPTPELDASSAIPSSSIS-----HDEDLLPRKNTEESTSSSSFSSLITSPASLQY 695

Query: 644 KK--VYESFIQEIDAIDNGIPMTEEQPKYDIHTHLSNRVKRLNPEWN 778
            +    +S + E++   + +P  +     DIH + ++ V   N E+N
Sbjct: 696 DENPFKQSVVAELNNNSSSVPFVDSAHASDIHAYDNDHVSTKNKEFN 742


>SPBC6B1.12c |sus1||SAGA complex subunit Sus1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 108

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +2

Query: 590 QLKEESTSLTNEDLKLIYKKVYESFIQE-IDAIDNGIPM 703
           QL++ +  + N D K+ ++K+YES +Q   ++I + + M
Sbjct: 44  QLRDYTRGIVNSDSKIDFQKLYESALQSATESIPDSVKM 82


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
 Frame = +2

Query: 344 KNLPQYKDAEIIRTRDLNKLNDC-DIVVDVGSVF---DHEKKRYDHHQAGFNETLSTLRP 511
           KNL    D  +I TR +N   +   IV DV  +    DH++  YD H++ F +       
Sbjct: 115 KNLASEMD--VINTRIVNPTGELLKIVKDVDKLLLKRDHKQLDYDRHRSSFKKLQEKKDK 172

Query: 512 ELGGSYKI-----KLSSAGLVYAYYGEDIIQQL 595
            L    K+         +   Y YY E + ++L
Sbjct: 173 SLKDEKKLYEAETAFEQSSQEYEYYNEMLKEEL 205


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
 Frame = -1

Query: 299 REFQSSSLKYLTN---SNDENYMMQN*VNYTFLVKFYLT*HRLCYVVFNQIVEFIVYSFN 129
           RE  S S+K   +   +NDE Y+++   N+       L     C V+     +  +Y   
Sbjct: 559 RECISLSIKIAVSHKLTNDETYLLKILKNFQLRYHDSLQLQEKCDVLHTTFNQLDLYVGT 618

Query: 128 TDCGMSPIVINSIKYVVL*MQNI*NSN 48
           T  G S ++ N +K +   + +I +SN
Sbjct: 619 TSVGKSSVLDNILKRIFNSLTSINDSN 645


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 450  SWSKTLPTSTTISQSFSLFRSLV 382
            SW+ T P+      SF LFRSL+
Sbjct: 1578 SWATTCPSRRLACNSFQLFRSLL 1600


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,041,215
Number of Sequences: 5004
Number of extensions: 62262
Number of successful extensions: 189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)