Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30e18
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0345 - 28142434-28142658,28143087-28143158,28143252-281433...   166   2e-41
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    31   1.4  
10_08_0444 + 17971724-17971797,17972119-17972176,17972613-179727...    29   5.5  
07_03_1591 + 27967065-27967090,27967236-27968054,27984940-279850...    28   7.3  
02_02_0285 + 8582033-8582201,8582375-8582652,8582762-8583394           28   9.7  

>02_05_0345 -
           28142434-28142658,28143087-28143158,28143252-28143371,
           28143483-28143674,28144919-28145017,28145448-28145594,
           28146310-28146513
          Length = 352

 Score =  166 bits (403), Expect = 2e-41
 Identities = 78/166 (46%), Positives = 112/166 (67%), Gaps = 2/166 (1%)
 Frame = +2

Query: 284 KIGTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRY 463
           ++GTH+G FHCDE L C++++   Q+  A+++RTRD   L+  D V+DVG V+D  + RY
Sbjct: 31  RVGTHNGSFHCDEALGCYLIRLTSQFAGADVVRTRDPQILDTLDAVLDVGGVYDPSRHRY 90

Query: 464 DHHQAGFNETLSTLRPELGGSYKIKLSSAGLVYAYYGEDIIQQLKEESTSLTNEDLKLIY 643
           DHHQ GFNE         G  +  KLSSAGLVY ++G++II   KE   S  +ED+  +Y
Sbjct: 91  DHHQKGFNEV-------FGHGFNTKLSSAGLVYKHFGKEII--AKELEVSEDHEDVHRLY 141

Query: 644 KKVYESFIQEIDAIDNGIPM--TEEQPKYDIHTHLSNRVKRLNPEW 775
             +Y+SF++ +DA+DNGI    T++ PKY  +THLS+RV RLNP+W
Sbjct: 142 LAIYKSFVEALDAVDNGINQYDTDQPPKYVNNTHLSSRVGRLNPDW 187


>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
            1625603-1625887,1626016-1626030,1626339-1626419,
            1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 398  KLNDCDIVVDVGSVFDHEKKRYDHHQAGFNETLSTLRPELGGSYKI 535
            K +  D + +VG+   HE    + H A   +TLS + P+ G + K+
Sbjct: 2668 KASQEDALEEVGTELPHESLHENRHGAKDEQTLSLIEPDTGNAEKL 2713


>10_08_0444 +
           17971724-17971797,17972119-17972176,17972613-17972708,
           17972974-17973000,17973019-17973075,17973604-17973687,
           17974304-17974384,17974928-17975071,17975218-17975309,
           17975998-17976079,17976818-17977000,17977360-17977438,
           17977555-17977613,17978162-17978290,17979188-17979367,
           17980312-17980446,17980528-17980602,17980890-17980947,
           17981035-17981282,17981594-17981733,17981961-17982132,
           17982797-17982887,17983099-17983221,17984951-17985032,
           17985715-17985835,17985886-17985915,17986427-17986549
          Length = 940

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 305 VFHCDEVLACF-MLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRYDHHQAG 481
           + H + V +C  +L  +   K A +    D N+L++C  ++  GS  +     Y  HQ  
Sbjct: 597 LMHNEVVTSCSNLLAGMEILKAAMVQLLNDYNRLSECVKIIPGGSTLNRNLPYYGVHQVH 656

Query: 482 F 484
           F
Sbjct: 657 F 657


>07_03_1591 +
           27967065-27967090,27967236-27968054,27984940-27985022,
           27985590-27985744,27985956-27986461,27986551-27986703,
           27987146-27987485,27987558-27987822,27987897-27988634,
           27989734-27989779,27989849-27990223,27991511-27991567,
           27991640-27992438
          Length = 1453

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
 Frame = +2

Query: 290 GTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRYDH 469
           G+H+GV     V AC M  N P+ KD      R  +KL + ++V  VG VFD  ++ YD 
Sbjct: 334 GSHEGVDRPPCVQACEM--NTPE-KDRVY---RHDSKLRE-EMVPKVGMVFDSYEEAYDF 386

Query: 470 HQ-----AGFNETLSTLRP 511
           ++     AGF+   S  +P
Sbjct: 387 YERYSYHAGFDIKKSRNKP 405


>02_02_0285 + 8582033-8582201,8582375-8582652,8582762-8583394
          Length = 359

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
 Frame = +2

Query: 308 FH-CDEVLACFMLKNLPQYK--DAEIIRTRDLNKLNDCDIV--VDVGSVFDHEKKRYDHH 472
           FH  DE L  + L+    Y+  D ++IR  DLNKL   D+     +G+    E   + H 
Sbjct: 16  FHPTDEELLYYYLRKKVAYEAIDLDVIREIDLNKLEPWDLKDRCRIGTGAQEEWYFFSHK 75

Query: 473 QAGFNETLSTLRPELGGSYK 532
              +     T R  + G +K
Sbjct: 76  DKKYPTGTRTNRATVAGFWK 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,551,909
Number of Sequences: 37544
Number of extensions: 330157
Number of successful extensions: 732
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)