Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30e18
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    24   1.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   7.4  

>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = +2

Query: 179 ITYVMLNRILPRTCSLLNSASYNFRRYCLSSIL---KMKIGTHDGVFHCDEVLACF 337
           +T+V L  +   +   +   + N R+ CL  I    ++  G   G F  D  L C+
Sbjct: 13  VTFVALKPVKSMSADQVEKLAKNMRKSCLQKIAITEELVDGMRRGEFPDDHDLQCY 68


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 674 IDAIDNGIPMTEEQPKYDIHT 736
           +DAID+G  + E   K DI+T
Sbjct: 337 MDAIDSGYLIDEYGKKIDIYT 357


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 674 IDAIDNGIPMTEEQPKYDIHT 736
           +DAID+G  + E   K DI+T
Sbjct: 337 MDAIDSGYLIDEYGKKIDIYT 357


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 305 LRREFQSSSLKYLTNSNDENYMMQN 231
           L R    SSL   TN+ND++Y  QN
Sbjct: 356 LERSRSWSSLDN-TNTNDQDYSSQN 379


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,790
Number of Sequences: 438
Number of extensions: 4360
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)