Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30e12
         (121 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   0.60 
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    23   4.2  
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po...    23   4.2  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    23   5.6  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    22   9.8  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.2 bits (55), Expect = 0.60
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 92   VFVTKIYVHNLHNITY 45
            V+  ++Y HNL NITY
Sbjct: 1207 VYEVRVYSHNLRNITY 1222


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 110 FIKNLFVFVTKIYVHNLHNITYND 39
           F +NL V +T  +V  LH + YN+
Sbjct: 452 FDRNLIVDLTLSFVLKLHPLEYNE 475


>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -3

Query: 74  YVHNLHNITYNDITKTFK 21
           ++ +LHNIT N + +T++
Sbjct: 302 HIEDLHNITSNQLYETYR 319


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 86  VTKIYVHNLHNITYNDITK 30
           V ++ VH LH +T+ DI++
Sbjct: 281 VAELPVHTLHKLTFLDISE 299


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 121 FFFYLLKIYLCSSQKYMFIIYIILHTMT 38
           F +YL KI+    QKY F +   L T T
Sbjct: 703 FNYYLKKIFADWWQKYNFTLSAALDTGT 730


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 452,780
Number of Sequences: 5004
Number of extensions: 5086
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 20
effective length of database: 2,262,398
effective search space used: 42985562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)