Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30e12
         (121 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006617-12|AAF39774.1|  324|Caenorhabditis elegans Serpentine r...    27   2.4  
Z74474-2|CAA98955.1|  425|Caenorhabditis elegans Hypothetical pr...    26   3.2  
U23486-4|AAC46776.2|  261|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AC024780-3|AAF60571.2|  300|Caenorhabditis elegans Serpentine re...    25   9.9  

>AC006617-12|AAF39774.1|  324|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 67 protein.
          Length = 324

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = -1

Query: 121 FFFYLLKIYLCSSQKYMFIIYIILHTMTLPKHLKTSFFYF 2
           FF Y   ++  S      I++ ++H  T P      FF +
Sbjct: 7   FFHYYWPVFFMSCSSLFLIMFFLIHNFTTPLLKPLRFFLY 46


>Z74474-2|CAA98955.1|  425|Caenorhabditis elegans Hypothetical
           protein K10C8.2 protein.
          Length = 425

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 107 IKNLFVFVTKIYVHNLHNITYNDIT 33
           + ++FVF   +Y  N HN  Y D++
Sbjct: 71  VASIFVFSVPVYAENSHNPEYIDLS 95


>U23486-4|AAC46776.2|  261|Caenorhabditis elegans Hypothetical
           protein F07F6.2 protein.
          Length = 261

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 121 FFFYLLKIYLCSSQKYMFIIYIIL 50
           F FY LKIY    + Y+ ++YIIL
Sbjct: 76  FIFYALKIY---KKVYLIVLYIIL 96


>AC024780-3|AAF60571.2|  300|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 50 protein.
          Length = 300

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -1

Query: 109 LLKIYLCSSQKYMFIIYIILHTMTLPKHLKTSFF 8
           L KI+LC     +F++  ++  +++ KH   SF+
Sbjct: 4   LTKIWLCYGIFSVFLMIFMIILLSVSKHFTYSFY 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,738
Number of Sequences: 27780
Number of extensions: 29736
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 12,740,198
effective HSP length: 20
effective length of database: 12,184,598
effective search space used: 231507362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)