Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30e12
         (121 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   1.0  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    18   9.7  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    18   9.7  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    18   9.7  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    18   9.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    18   9.7  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 119 FFLFIKNLFVFVTKIYVHNLHNIT 48
           FF+F+   F+F T I    +H  T
Sbjct: 278 FFVFLSFAFIFATIIQFAVVHYFT 301


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/18 (33%), Positives = 9/18 (50%)
 Frame = -3

Query: 71  VHNLHNITYNDITKTFKN 18
           +HN +N  YN     + N
Sbjct: 90  IHNNNNYKYNYNNNNYNN 107


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/18 (33%), Positives = 9/18 (50%)
 Frame = -3

Query: 71  VHNLHNITYNDITKTFKN 18
           +HN +N  YN     + N
Sbjct: 90  IHNNNNYKYNYNNNNYNN 107


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/18 (33%), Positives = 9/18 (50%)
 Frame = -3

Query: 71  VHNLHNITYNDITKTFKN 18
           +HN +N  YN     + N
Sbjct: 90  IHNNNNYKYNYNNNNYNN 107


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/18 (33%), Positives = 9/18 (50%)
 Frame = -3

Query: 71  VHNLHNITYNDITKTFKN 18
           +HN +N  YN     + N
Sbjct: 90  IHNNNNYKYNYNNNNYNN 107


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/18 (33%), Positives = 9/18 (50%)
 Frame = -3

Query: 71  VHNLHNITYNDITKTFKN 18
           +HN +N  YN     + N
Sbjct: 323 IHNNNNYKYNYNNNNYNN 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,153
Number of Sequences: 438
Number of extensions: 342
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 20
effective length of database: 137,583
effective search space used:  2614077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)