Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30e09
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      31   0.12 
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    27   2.6  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    26   6.0  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    26   6.0  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   7.9  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -3

Query: 289 RKKSRRHRNSVFLLRR*YYFFSEFAFFTQIREKLFISYLLYSRHSNILKFLCY 131
           R K   H +  F +   +Y+F  F FF     +  I+  ++   SN++ F C+
Sbjct: 58  RLKLPYHHHHTFTIEAFFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCF 110


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/78 (24%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
 Frame = +2

Query: 131 IAEKFKYITMSGVKQVRNKKLL---PDLRKE--GELTKEIILSTKEKHGVPVTSRLFSHH 295
           I ++F+  ++S +   + +++L   PD+ +E    + +EI++S  E H   ++   F+ H
Sbjct: 410 IEKQFQSTSISAMTSEKQEQILRECPDIDEELGKSILREIVVSGDEVHWDDISGLEFAKH 469

Query: 296 TLASVRKLSFYFPYNLPD 349
           +L    K +  +P+  PD
Sbjct: 470 SL----KEAVVYPFLRPD 483


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
 Frame = +2

Query: 470 NTCDKLPSSGVPM---GHPLR 523
           N  D+L SSG+PM   GHP R
Sbjct: 268 NIVDRLSSSGIPMVRLGHPAR 288


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 271 DV*TFFSSYLSER*KTKLLFSL*FARRQPGLH 366
           D  T F SY + + KT+++  L    R P LH
Sbjct: 828 DTSTSFGSYSTGKLKTRVIVGLCIVARNPSLH 859


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 255 FSFVDNIISLVSSPSLRKSGRSFL 184
           + F DN+ISL+ S  L KS R+ L
Sbjct: 540 YEFSDNVISLLKSRRLDKSDRNEL 563


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,426
Number of Sequences: 5004
Number of extensions: 58299
Number of successful extensions: 177
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)