Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30e09
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.52 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.52 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   1.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   4.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.4  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 175 LLYSRHSNILKFLCYPS 125
           +LY   S+++ FLCYPS
Sbjct: 300 MLYIPESDLVTFLCYPS 316


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 175 LLYSRHSNILKFLCYPS 125
           +LY   S+++ FLCYPS
Sbjct: 300 MLYIPESDLVTFLCYPS 316


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 278 RLFSHHTLASVRKLSFYFPYNLP 346
           R+F HH     R++S YF +  P
Sbjct: 316 RIFGHHLNRLGREISTYFTFTRP 338


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 77  YYALFVFYCLLIVYMI*WIAEKFKYITMSGVKQVRNKKLLPDLRKEG 217
           +Y+L   +  L+   + ++A +  Y    G +Q R  +L+P L  +G
Sbjct: 433 WYSLASSWPALVPLALGFLAGELTYSQEIGDRQERESELVPYLENKG 479


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 260 GVPVTSRLFSHHTLASVRKLSFYFPYNLPDDSLDF 364
           G+   +R F+H ++    + + Y P++L     DF
Sbjct: 239 GLQKYTRSFAHQSINKEARSNLYLPFHLTLSFRDF 273


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 260 GVPVTSRLFSHHTLASVRKLSFYFPYNLPDDSLDF 364
           G+   +R F+H ++    + + Y P++L     DF
Sbjct: 234 GLQKYTRSFAHQSINKEARSNLYLPFHLTLSFRDF 268


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +2

Query: 203 LRKEGELTKEIILSTKEKHGVPVTSRLFSHHTLASVRKLSFYF 331
           LR EG+ T    +   E     + + +  H T +   ++SFY+
Sbjct: 753 LRLEGDETPPYGMELTEAEHYALYTAMAPHATASEFDEMSFYY 795


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,365
Number of Sequences: 438
Number of extensions: 4347
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)