Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30e08
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    31   0.13 
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    29   0.54 
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    27   2.2  
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    26   5.1  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      26   6.7  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   8.9  

>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = -1

Query: 674 LFEFLFSTYRGLHIRTHVSYTNNYVLFIIFSLYSFLRL 561
           LF  LFST+  LH R+H  Y     L    SL+  LRL
Sbjct: 100 LFCLLFSTFLSLHGRSHFGYIYGIALLGSLSLHFVLRL 137


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 23/73 (31%), Positives = 34/73 (46%)
 Frame = +1

Query: 325 VINSHYKKQHDMSKIDITIQVDPYVNKYDCRGAVSLSSSMQSNVPSPFTGNHTHLNMPGS 504
           V +SHY   H M    +  + D    K D +  V+LS S++S V    T   TH +M   
Sbjct: 147 VDSSHYPIFHQMEGALVWNRNDTAKMKNDLK-KVALSPSLKSMVDDETTALETHNDMQDI 205

Query: 505 QWGQGHKYLSDHL 543
              +  K++S HL
Sbjct: 206 YSLEETKFVSQHL 218


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -1

Query: 482 VWFPVKGLGTL-LCMDEDRLTAPRQSYLLTYGSTCIVISI 366
           ++F +  +GTL + ++  +LT  + S L+ YG+ C++I +
Sbjct: 228 IFFGMPAIGTLKISLERLQLTFMQVSQLVGYGTKCLIILV 267


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +3

Query: 621 NMSTNVKPPVSAKEKLKKAVKEYGSTVI--VFHVTISLISLGS-CYLLV 758
           N   +V+PP+S+ +     V+ YG T +   +   ++  +LGS CY  +
Sbjct: 150 NSKLSVRPPLSSFQSASDIVRRYGFTALWNGYRYHLTRDALGSACYFTI 198


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 656 STYRGLHIRTHVSYTNNYVL 597
           S YRG   RT + Y N+Y+L
Sbjct: 604 SLYRGFITRTKIDYCNDYLL 623


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 690 GSTVIVFHVTISLISLGSCYLLV 758
           G+  + F V+IS+ SLGSC  LV
Sbjct: 124 GNVSMDFGVSISVSSLGSCVFLV 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,261,320
Number of Sequences: 5004
Number of extensions: 73389
Number of successful extensions: 209
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)