Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30e06
         (412 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    21   4.7  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   6.2  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   6.2  

>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
 Frame = -2

Query: 183 HFVCSNSWFHFIGSNVIRVEVVF---NFLSGVNVLVFDS 76
           H V  N W  F     I+V+V F     L GV V   D+
Sbjct: 322 HIVKGNQWLGFDDPKSIQVKVEFANEKNLGGVMVWSLDT 360


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 116 LTFCLV*MCLSLI 78
           + FC++ MCL +I
Sbjct: 72  MVFCIIIMCLGVI 84


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 116 LTFCLV*MCLSLI 78
           + FC++ MCL +I
Sbjct: 72  MVFCIIIMCLGVI 84


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,539
Number of Sequences: 336
Number of extensions: 1694
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8963165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)