Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30e02
         (730 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    31   0.013
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    31   0.013
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    31   0.013
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   4.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   4.4  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    22   4.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   4.4  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    22   4.4  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    22   5.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.8  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   7.7  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   7.7  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 30.7 bits (66), Expect = 0.013
 Identities = 36/165 (21%), Positives = 65/165 (39%), Gaps = 7/165 (4%)
 Frame = +1

Query: 253 GGIPNTPKRDNLPTNTNIETNGKNNYNSQFP---QLGSTHKSQHTNTNQQSLQSNGKRDY 423
           G   NTP   N  TN N  +NG ++  S  P    +    +S    +   S +   K + 
Sbjct: 126 GNNNNTPSATNNNTNFNNNSNGASSVGSSSPFDKLIEEDSRSNEDTSLHPSPRITKKANS 185

Query: 424 VSPQFTTPK--PSSGQTLIPQSTRNPNHNPSSSTRGITPLSPTTKVQPNHQTTGKVKDLI 597
           VS +    +  P+S +  I  S  +P  +  ++   ++P S  + + P +   G    ++
Sbjct: 186 VSVKVENRRNSPNSCEKKIGLSKISPKESQDAANVKLSPKS-ASSLPPGNNIHGMAPSVM 244

Query: 598 HFYDGKSKDQNAPQPIPSYSSILQGTGNN--NFPTSGVCRFDENY 726
           + +  +S    A   I S +  +Q   N    F + G   F   Y
Sbjct: 245 YPHLNRSSPTTA-TAIASATVTIQNVSNTIPPFASRGSMHFPNQY 288


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 30.7 bits (66), Expect = 0.013
 Identities = 36/165 (21%), Positives = 65/165 (39%), Gaps = 7/165 (4%)
 Frame = +1

Query: 253 GGIPNTPKRDNLPTNTNIETNGKNNYNSQFP---QLGSTHKSQHTNTNQQSLQSNGKRDY 423
           G   NTP   N  TN N  +NG ++  S  P    +    +S    +   S +   K + 
Sbjct: 74  GNNNNTPSATNNNTNFNNNSNGASSVGSSSPFDKLIEEDSRSNEDTSLHPSPRITKKANS 133

Query: 424 VSPQFTTPK--PSSGQTLIPQSTRNPNHNPSSSTRGITPLSPTTKVQPNHQTTGKVKDLI 597
           VS +    +  P+S +  I  S  +P  +  ++   ++P S  + + P +   G    ++
Sbjct: 134 VSVKVENRRNSPNSCEKKIGLSKISPKESQDAANVKLSPKS-ASSLPPGNNIHGMAPSVM 192

Query: 598 HFYDGKSKDQNAPQPIPSYSSILQGTGNN--NFPTSGVCRFDENY 726
           + +  +S    A   I S +  +Q   N    F + G   F   Y
Sbjct: 193 YPHLNRSSPTTA-TAIASATVTIQNVSNTIPPFASRGSMHFPNQY 236


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 30.7 bits (66), Expect = 0.013
 Identities = 36/165 (21%), Positives = 65/165 (39%), Gaps = 7/165 (4%)
 Frame = +1

Query: 253 GGIPNTPKRDNLPTNTNIETNGKNNYNSQFP---QLGSTHKSQHTNTNQQSLQSNGKRDY 423
           G   NTP   N  TN N  +NG ++  S  P    +    +S    +   S +   K + 
Sbjct: 257 GNNNNTPSATNNNTNFNNNSNGASSVGSSSPFDKLIEEDSRSNEDTSLHPSPRITKKANS 316

Query: 424 VSPQFTTPK--PSSGQTLIPQSTRNPNHNPSSSTRGITPLSPTTKVQPNHQTTGKVKDLI 597
           VS +    +  P+S +  I  S  +P  +  ++   ++P S  + + P +   G    ++
Sbjct: 317 VSVKVENRRNSPNSCEKKIGLSKISPKESQDAANVKLSPKS-ASSLPPGNNIHGMAPSVM 375

Query: 598 HFYDGKSKDQNAPQPIPSYSSILQGTGNN--NFPTSGVCRFDENY 726
           + +  +S    A   I S +  +Q   N    F + G   F   Y
Sbjct: 376 YPHLNRSSPTTA-TAIASATVTIQNVSNTIPPFASRGSMHFPNQY 419


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 295 NTNIETNGKNNYNSQFPQLGSTH 363
           N+N+ +NG    N   PQL S H
Sbjct: 71  NSNVLSNGYGYGNYYHPQLHSHH 93


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 295 NTNIETNGKNNYNSQFPQLGSTH 363
           N+N+ +NG    N   PQL S H
Sbjct: 71  NSNVLSNGYGYGNYYHPQLHSHH 93


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 604 YDGKSKDQNAPQPIPSYSSILQG 672
           YDG   D   PQ   +++ +LQG
Sbjct: 137 YDGLDVDWEYPQDKATFNRLLQG 159


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 295 NTNIETNGKNNYNSQFPQLGSTH 363
           N+N+ +NG    N   PQL S H
Sbjct: 71  NSNVLSNGYGYGNYYHPQLHSHH 93


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 295 NTNIETNGKNNYNSQFPQLGSTH 363
           N+N+ +NG    N   PQL S H
Sbjct: 71  NSNVLSNGYGYGNYYHPQLHSHH 93


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -2

Query: 492 ISSGLRDQSLTGTGLRCCKLWRYIIS 415
           IS  + D    G G  C   WR I +
Sbjct: 363 ISPSINDDGTCGNGYGCEHRWRQIFN 388


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 525  YNPSVSYY*SPTKPSNNRKSERPH 596
            + PS S +  PTKPS    S   H
Sbjct: 1159 HKPSTSSWQKPTKPSYRPPSTTNH 1182


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -2

Query: 492 ISSGLRDQSLTGTGLRCCKLWRYIIS 415
           IS  + D    G G  C   WR I +
Sbjct: 362 ISPSINDDGTCGNGYVCEHRWRQIFN 387


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -2

Query: 492 ISSGLRDQSLTGTGLRCCKLWRYIIS 415
           IS  + D    G G  C   WR I +
Sbjct: 363 ISPSINDDGTCGNGYVCEHRWRQIFN 388


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.132    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,398
Number of Sequences: 336
Number of extensions: 4917
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)