Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30d21
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024744-2|AAK72068.1|  327|Caenorhabditis elegans Hypothetical ...   137   6e-33
U55363-8|AAA97966.1|  829|Caenorhabditis elegans Germinal center...    27   9.8  

>AC024744-2|AAK72068.1|  327|Caenorhabditis elegans Hypothetical
           protein Y108G3AL.2 protein.
          Length = 327

 Score =  137 bits (332), Expect = 6e-33
 Identities = 68/175 (38%), Positives = 95/175 (54%)
 Frame = +3

Query: 174 EIDEFNQYQKSSKTGKQHNVLPIWGNEQTMNLNPLILANIQGSSYFKVHLFKLKTYHEVV 353
           E +E+   + + K GK+ N LP+WGN+ TMNLN L+L NI+ S Y+K +L ++  +  ++
Sbjct: 36  EEEEYEDEEGTYK-GKRSNTLPVWGNKVTMNLNTLVLENIRESYYYKNNLVEIDNFQTLI 94

Query: 354 DEIYYQVKHLEPWERGSRKTSXXXXXXXXXXXXXXXXXXSTAFCXXXXXXXXXXXXXQVN 533
           ++I+YQVKHLEPWE+G+R+                    S+A+C             Q+ 
Sbjct: 95  EQIFYQVKHLEPWEKGTRRLQGMTGMCGGVRGVGAGGVVSSAYCLLYRLFNLKISRKQLI 154

Query: 534 GLLQHTDSPYIRALGFMYIRYTQPPADLXXXXXXXXXXXXXXXPRAGGGASTTIG 698
            +L    S YIR LGFMYIRYTQPPADL               PR+GGG   T G
Sbjct: 155 SMLNSRQSVYIRGLGFMYIRYTQPPADLWYWLEPYLDDDREIDPRSGGGDLMTFG 209


>U55363-8|AAA97966.1|  829|Caenorhabditis elegans Germinal center
           kinase family protein2 protein.
          Length = 829

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 595 IHNHQLIYLTGMWITLKMKKRLTPVLEVVHPQLL 696
           ++ H L+ LT   +TLKM K L  + E   P+ L
Sbjct: 546 VYRHDLVALTQKNLTLKMSKNLNKIPEKYVPKRL 579


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,570,213
Number of Sequences: 27780
Number of extensions: 271321
Number of successful extensions: 639
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)