Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30d14
         (797 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    22   6.5  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   8.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   8.6  

>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +3

Query: 693 VDEAVLTFIFLVGRLRKSVK---LLLSILSRNKVIICK 797
           VDE  + F+ L+G L+ ++    L+LS      +  CK
Sbjct: 152 VDEDKVNFVTLLGELKSALNAKGLILSAAVSGGIASCK 189


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 554 PVEPETSARPDELPS*FCKCADSAAGSARP 465
           P+ P+T A    LP+    C+++AA   +P
Sbjct: 38  PITPDTEATGLSLPACRLFCSEAAALWPKP 67


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = +1

Query: 553 GGNRFIVCELKGIVLGTSANTSEKCCCSSGEDGATGSNGPLSSL 684
           G    ++C   G+V   ++ +S     ++       S+GP SS+
Sbjct: 48  GAGSNLLCASNGLVTTLASGSSLNGLTNNVPSNGLSSSGPFSSI 91


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,340
Number of Sequences: 336
Number of extensions: 4686
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)