Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30d10
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    24   1.0  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   5.4  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   5.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   5.4  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    22   5.4  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 388 FAPYFRTPYRCPLNLQ 341
           +  YFR P+RC  NLQ
Sbjct: 339 YTMYFRMPHRCHGNLQ 354


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 87  IFLKCNVIFIIFTINVGIVCFSCTAFVVF 1
           +FL C   F    I +  + + C AF++F
Sbjct: 280 LFLLCIYYFYCALIILLCIYYFCRAFIIF 308


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 691 FLLKITFIYLFIKINVIV*DIQLFPSELLQGFEVYRIRCLFV 566
           FL  +TF  +F  INV   ++ +F  E   G  +YR    F+
Sbjct: 453 FLTNMTFQNVFAVINVFSGELPVFLQEHRNG--MYRPSIYFI 492


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 691 FLLKITFIYLFIKINVIV*DIQLFPSELLQGFEVYRIRCLFV 566
           FL  +TF  +F  INV   ++ +F  E   G  +YR    F+
Sbjct: 453 FLTNMTFQNVFAVINVFSGELPVFLQEHRNG--MYRPSIYFI 492


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -1

Query: 358 CPLNLQYL 335
           CP+NLQYL
Sbjct: 167 CPMNLQYL 174


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,881
Number of Sequences: 336
Number of extensions: 2336
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)