Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30d10
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0558 + 18756797-18756887,18757189-18757262,18759881-187600... 30 2.0
10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544 30 2.0
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 29 3.5
01_01_1083 - 8519987-8520254,8520442-8520554 28 6.1
10_08_0756 + 20344406-20344590,20345811-20345880,20346229-203462... 28 8.0
03_01_0314 - 2477593-2480685 28 8.0
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 28 8.0
01_06_0366 - 28779899-28780543,28780813-28781076,28781165-287814... 28 8.0
>10_08_0558 + 18756797-18756887,18757189-18757262,18759881-18760069,
18760190-18760309,18760457-18760521,18760684-18760828,
18761304-18763337,18763904-18764025,18764127-18764309,
18764635-18764690,18765086-18765141
Length = 1044
Score = 29.9 bits (64), Expect = 2.0
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Frame = +1
Query: 250 SVMAEELQKVHLFYDDINKIK--VLEENVLKDTEDLRDTCKEYENKVQNFEXXXXXXXXX 423
SV++EE+ ++ ++++ + + EEN KD E L C++ + +Q+ +
Sbjct: 763 SVLSEEIDQLKAKIENLSNERDNLFEENEQKDKE-LAANCQK-DMFLQDRDAEIALLNKE 820
Query: 424 XXXXGDNVENKKMAAIGAMNLLKSIAKDKESEQLKLQAEINDKTSLLEQIDSEYDTLQIL 603
D V+ + +N LKS +KE KLQ+EI + EYD L+IL
Sbjct: 821 LASIKDQVQTY----LEEINTLKSSKNEKEEMIEKLQSEI-------RSLKFEYDNLKIL 869
Query: 604 EAT 612
+T
Sbjct: 870 MST 872
>10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544
Length = 1274
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 286 FYDDINKIKVLEENVLKDTEDLRDTCKEYE 375
F+ D+NKI EENV + R TCK ++
Sbjct: 471 FFQDVNKISQREENVYRSQLRDRTTCKIHD 500
>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 271 QKVHLFYDDINKIKVLEENVLKDTEDLRDTCKEYE 375
++V + DDI ++KVL N+ + +DLR T E E
Sbjct: 1421 ERVLKYQDDILQLKVLLTNLEEQVDDLRSTKDEVE 1455
>01_01_1083 - 8519987-8520254,8520442-8520554
Length = 126
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +1
Query: 256 MAEELQKVHLFYDDINKIKVL-EENV--LKDTEDLRDTCKEYENKVQN 390
+ E+ +VH DDI K VL E+N LKD E R +E ++ Q+
Sbjct: 52 LEEKRNQVHRLQDDIEKCHVLIEDNAAKLKDNEQNRVELQEQTDRCQS 99
>10_08_0756 +
20344406-20344590,20345811-20345880,20346229-20346291,
20348390-20348521,20348604-20348737,20351245-20351323,
20353050-20353111,20353211-20353310,20353448-20353489,
20353605-20353646,20353959-20354150
Length = 366
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 268 LQKVHLFYDDINKIKVLEENVLKDTEDLRDTCKEYE 375
L+K L I K+K E +LKD E+LR + E
Sbjct: 273 LKKTELLEQQIAKLKEKERTLLKDNENLRGKHRNLE 308
>03_01_0314 - 2477593-2480685
Length = 1030
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 566 SNNEVLSLISACNFSCSDSLSLAIDFNKFIAPI-AAIFLFSTLS 438
SNN + I A SC +SL++ N+F I AA+ + TLS
Sbjct: 508 SNNRLSGAIPASLASCQRLVSLSLRNNRFTGQIPAAVAMMPTLS 551
>01_06_0481 -
29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/34 (26%), Positives = 23/34 (67%)
Frame = +1
Query: 283 LFYDDINKIKVLEENVLKDTEDLRDTCKEYENKV 384
LF+D +++ ++L ++K+ D + TC++ +K+
Sbjct: 672 LFHDFLHRFRILASEIVKEKNDEKVTCQKVLDKM 705
>01_06_0366 -
28779899-28780543,28780813-28781076,28781165-28781431,
28781546-28781774,28781868-28781985,28782229-28782486,
28782585-28782858,28782950-28783475,28784289-28784527,
28784626-28784847,28784912-28784914,28785124-28785299,
28786147-28786201,28786288-28786557
Length = 1181
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 502 KDKESEQLKLQAEINDKTSLLEQIDSEYDTLQILEATQM 618
KD E++K AE+ + + ++++ + YDTL TQ+
Sbjct: 472 KDATLEEIKRAAELANAANFIDKLPNGYDTLVGQRGTQL 510
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,757,770
Number of Sequences: 37544
Number of extensions: 182425
Number of successful extensions: 463
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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