Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30d05
         (724 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.47 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   1.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   1.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   1.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   1.9  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   7.6  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 691 IETLASTRSAPSSIRPVHAPRRCTINTNSLTKAAASSPS 575
           +E  +  ++  + I    +P   +IN N+ T ++ASSPS
Sbjct: 137 VEKSSKLKNKSAPILTKTSPTPVSINNNTSTSSSASSPS 175


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = -2

Query: 471  LVPIEFVLFLSFSCKAFCEILV 406
            ++PI F + + F+CK+  +++V
Sbjct: 951  IIPILFFMLVCFTCKSNIQLIV 972


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = -2

Query: 471  LVPIEFVLFLSFSCKAFCEILV 406
            ++PI F + + F+CK+  +++V
Sbjct: 951  IIPILFFMLVCFTCKSNIQLIV 972


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = -2

Query: 471  LVPIEFVLFLSFSCKAFCEILV 406
            ++PI F + + F+CK+  +++V
Sbjct: 951  IIPILFFMLVCFTCKSNIQLIV 972


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = -2

Query: 471  LVPIEFVLFLSFSCKAFCEILV 406
            ++PI F + + F+CK+  +++V
Sbjct: 951  IIPILFFMLVCFTCKSNIQLIV 972


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 685 TLASTRSAPSSIRPVHAPRRCTINTNSLTKAAASSP 578
           T + T+   S   P  APR     T   T + ++SP
Sbjct: 198 TTSPTKVKASKASPAAAPRSVATPTGIPTPSTSASP 233


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,539
Number of Sequences: 336
Number of extensions: 3196
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)