Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30d05
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    61   1e-10
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    31   0.22 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    28   1.2  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    27   3.6  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   4.7  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    26   4.7  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   6.3  
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    26   6.3  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    26   6.3  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   6.3  

>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 33/77 (42%), Positives = 43/77 (55%)
 Frame = +3

Query: 462 LEQDSGKSLHDAELKRSLVDLNRAGAPLIEVVFEPDLQDGEEAAALVKELVLIVQRLGAC 641
           LEQD+ KS       R L+D NRAG PL+E+V +P   D    +A + +L  IV+  G  
Sbjct: 129 LEQDTAKSTSAKNPSRILLDYNRAGTPLLEIVTKPCFHDVNTVSAFLFKLQSIVRFAGIS 188

Query: 642 TGRMEEGALRVDANVSI 692
              ME G +R D NVSI
Sbjct: 189 EALMENGGMRCDVNVSI 205


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = -1

Query: 616 NTNSLTKAAASSPSCKSGSNTTSMSGAPALFRSTKLLLSSASCRDFPLSCSN 461
           +++S   +++SSPS  S S+TTS S + + F ST    SS S      S S+
Sbjct: 338 SSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSS 389


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
 Frame = -1

Query: 685 TLASTRSAPSSIRPVHAPRRCTINT-NSLTKAAASSPSCKS--GSNTTSMSGAPALFRST 515
           T +S +   SS+ P   P    +++ NS T  +ASS    S   + TTS S  P    S+
Sbjct: 270 TSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSS 329

Query: 514 KLLLSSASCRDFPLSCSN 461
               ++ S    PLS  N
Sbjct: 330 ANSTTATSTSSTPLSSVN 347



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/54 (29%), Positives = 31/54 (57%)
 Frame = -1

Query: 622 TINTNSLTKAAASSPSCKSGSNTTSMSGAPALFRSTKLLLSSASCRDFPLSCSN 461
           ++N+ S T +A+S+P   + S T++   + A   +T  +L ++S    PLS +N
Sbjct: 377 SVNSTSAT-SASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSAN 429



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/54 (29%), Positives = 31/54 (57%)
 Frame = -1

Query: 622 TINTNSLTKAAASSPSCKSGSNTTSMSGAPALFRSTKLLLSSASCRDFPLSCSN 461
           ++N+ S T +A+S+P   + S T++   + A   +T  +L ++S    PLS +N
Sbjct: 491 SVNSTSAT-SASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSAN 543



 Score = 25.4 bits (53), Expect = 8.3
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -1

Query: 679 ASTRSAPSSIRPVHAPRRCTINTNS-LTKAAASSPSCKSGSNTTSMSGAPALFRSTKLLL 503
           AST  + S++ P         NT S L  ++AS+PS  S    TS   +     ++ L  
Sbjct: 636 ASTPLSNSTVAPTSTFTSSGFNTTSGLPTSSASTPSSNSSIVPTSTFTSSGFNTTSGLPT 695

Query: 502 SSAS 491
           SSAS
Sbjct: 696 SSAS 699


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -1

Query: 679 ASTRSAPSSIRPVHAPRRCTINTNSLTKAAASSPSCKSGSNTTSMSGAPALF 524
           AS  SAPS+     A       T + T A+ SSP     +NT + +GA  LF
Sbjct: 59  ASNTSAPSTFSFGKAA-----TTGNSTNASTSSPFSFGSTNTNNTAGAKPLF 105


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 22/79 (27%), Positives = 35/79 (44%)
 Frame = -1

Query: 706 SPGRRIETLASTRSAPSSIRPVHAPRRCTINTNSLTKAAASSPSCKSGSNTTSMSGAPAL 527
           SP   ++   S  S  S+   +H+      NT  + + + SSP   S S+ T  SGA   
Sbjct: 379 SPNPFLQPTFSGTSQASAHPSIHSQSATFNNTQDVNRQSVSSPKVVSSSSVTG-SGA--- 434

Query: 526 FRSTKLLLSSASCRDFPLS 470
             S + + +  S   FP+S
Sbjct: 435 --SGRKVYTPQSKNPFPIS 451


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -1

Query: 619 INTNSLTKAAASSPSCKSGSNTTSMSGAPALFRSTKLLLSSAS 491
           +N NS  ++  S  S  S + T SMS A   F S+ +L +SAS
Sbjct: 449 LNINSALRSVTSGQSV-SATPTVSMSIAATSFGSSLVLTASAS 490


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 616  NTNSLTKAAASSPSCKSGSNTTSMSGAPALFRSTKLLLSSASCRD 482
            NTN L  A AS   C + +NT S   + +  R  ++++S   C D
Sbjct: 4581 NTNVLALADASM-KCFNYANTASHHRSNSDIRQLEIIISDGICED 4624


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 325 IFYINLLKTVPQTYTSFFLHSNFNRYSHQDFTKSLT 432
           IF I        +YT+   H N++ YS   FT SLT
Sbjct: 3   IFPIVKYSVAEDSYTTDSSHINWSHYSDGGFTLSLT 38


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1201

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 334  INLLKTVPQTYTSFFLHSNFNRYSHQDFTKS 426
            +N+ KT+ +    F  H+NFN+    DF  S
Sbjct: 1136 VNIQKTLAKCAEEFAEHTNFNKVELLDFVYS 1166


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 622  TINTNSLTKAAASSPSCKSGSNTTSMSGA-PALFRS 518
            +INTNSLT    SS S  + S  TS S   P+  RS
Sbjct: 971  SINTNSLTVKPESSLSSSTTSGLTSSSSTIPSSTRS 1006


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,289
Number of Sequences: 5004
Number of extensions: 50560
Number of successful extensions: 154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)