Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30d05
(724 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0023 - 19325966-19326046,19326132-19326248,19326635-193267... 85 5e-17
04_04_1359 - 32886181-32886789 32 0.53
05_06_0060 - 25266735-25267210,25267323-25267569,25267650-252683... 30 1.6
08_01_0657 + 5674907-5674993,5675615-5676583 29 2.8
03_03_0177 + 15140414-15140777,15142067-15142239 29 4.9
08_01_0774 + 7482311-7482919,7484012-7484077,7484211-7484384,748... 28 8.6
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 28 8.6
03_05_0646 - 26385447-26385463,26385546-26385657,26385838-263859... 28 8.6
02_05_1277 - 35408097-35409080 28 8.6
>11_06_0023 -
19325966-19326046,19326132-19326248,19326635-19326703,
19326922-19327119,19327388-19327591,19327688-19327828,
19328416-19328625,19329330-19329944
Length = 544
Score = 85.0 bits (201), Expect = 5e-17
Identities = 42/81 (51%), Positives = 54/81 (66%)
Frame = +3
Query: 462 LEQDSGKSLHDAELKRSLVDLNRAGAPLIEVVFEPDLQDGEEAAALVKELVLIVQRLGAC 641
+E+D+GK LH S VDLNRAG PL+E+V EPD++ G EAA EL +V+ LG
Sbjct: 188 MEEDAGKLLHSESGSYSQVDLNRAGVPLLEIVSEPDMRTGIEAAEYGAELQRLVRYLGVS 247
Query: 642 TGRMEEGALRVDANVSIRRPG 704
G M+EG+LR D NVS+R G
Sbjct: 248 NGNMQEGSLRCDVNVSVRPIG 268
>04_04_1359 - 32886181-32886789
Length = 202
Score = 31.9 bits (69), Expect = 0.53
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -1
Query: 640 HAPRRCTINTNSLTKAAASSPSCKSGSNTTSMSGAPALFRSTKLLLSSA 494
HAPR ++++S AA ++ C +NTT + PA FR+ L+ A
Sbjct: 6 HAPRSVVVSSSS-PAAAIATAGCVVDTNTTFVQADPATFRALVQKLTGA 53
>05_06_0060 -
25266735-25267210,25267323-25267569,25267650-25268345,
25268457-25268709,25268786-25269261,25270760-25270909
Length = 765
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -3
Query: 167 NKNEKR*RTTKANVAS---AIEYIFNGSLIKKISIYSYEIPRRN 45
N +EKR +T NV++ + EY N L Y YE+PRRN
Sbjct: 365 NFSEKRSTSTSRNVSNPDGSWEYDVNRHLAALYGSYCYELPRRN 408
>08_01_0657 + 5674907-5674993,5675615-5676583
Length = 351
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Frame = -1
Query: 703 PGRRIETLASTRSAPSSIRPVHAPRRCTINTNSLTKAAASSPSCKSGSNTTSMSGAPALF 524
P RR++ L ++ P V A RC + +NS T +AA S A L
Sbjct: 57 PHRRLQPLGRPQARPPRRADVKAALRCRLISNSATTSAAVDGHVSHAFKRAGESSAWVLI 116
Query: 523 RSTKLLLSSASCRD--FPLSCS 464
L +S + D F + C+
Sbjct: 117 LRRSALEASGAIVDDAFTVECT 138
>03_03_0177 + 15140414-15140777,15142067-15142239
Length = 178
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 679 ASTRSAPSSI-RPVHAPRRCTINTNSLTKAAASSPSCKSGSNTTSMSGAPA 530
+ T P +I R +H P C + ++ +K A +PS T+S SG A
Sbjct: 91 SKTLPLPINITRALHLPAACGADASAFSKCLAPAPSPSVAPGTSSGSGGAA 141
>08_01_0774 +
7482311-7482919,7484012-7484077,7484211-7484384,
7484473-7484603,7484726-7484802,7484981-7485064,
7487885-7488066,7488189-7488266,7489813-7489945,
7491610-7491670,7491861-7491942,7492143-7492271,
7492510-7492653,7493102-7493204,7493382-7493513,
7494127-7494485,7495149-7495229,7495384-7495450,
7495636-7495706,7496087-7496178,7496365-7496458,
7497692-7497789,7498206-7498341,7498599-7498618,
7498781-7498876,7498973-7499060,7499171-7499288,
7499738-7499759,7500203-7500326,7500625-7500702,
7500837-7500955,7501816-7501869,7502260-7502362,
7503133-7503261,7503345-7503453,7503788-7503819
Length = 1424
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 576 DGEEAAALVKELVLIVQRLGACTGRMEEGALRVDANVSIRRPGDPL 713
DG++ V++ L+V R G+ TGR G L + + PGD L
Sbjct: 802 DGKDNKQRVRDPTLLVDRAGSATGRRGGGGLTL---IGKADPGDGL 844
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = -1
Query: 691 IETLASTRSAPSSIRPVHAPRRCTINTNSLTKAAASSPSCKSGSNTTSMSGAPALFRSTK 512
++ AS SA ++ P P+ AAA+SPS + S++ M+ + + +
Sbjct: 1028 LQPAASAASASEAMMPAAQPQAAA------AAAAAASPSSSAASSSEGMTASQPQAPAAE 1081
Query: 511 LLLSSASCRDF 479
SSA DF
Sbjct: 1082 AASSSAGAADF 1092
>03_05_0646 -
26385447-26385463,26385546-26385657,26385838-26385957,
26386120-26386371
Length = 166
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 601 TKAAASSPSCKSGSNTTSMSGAPAL 527
+KAA SSP C + N TS S +PA+
Sbjct: 12 SKAATSSPLCLTLDNPTSTSTSPAV 36
>02_05_1277 - 35408097-35409080
Length = 327
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 649 RPVHAPRRCTINTNSLTKAAASSPSCKSGSNTT 551
RP+HAP T + T A A++P K +T+
Sbjct: 238 RPLHAPPERAATTAATTAATATAPDTKKEGSTS 270
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,064,366
Number of Sequences: 37544
Number of extensions: 301135
Number of successful extensions: 924
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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