Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30d05
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006617-1|AAF39770.2|  397|Caenorhabditis elegans Hypothetical ...    64   1e-10
AF047661-3|AAC04436.1|  198|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p...    29   4.4  
Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AC006617-1|AAF39770.2|  397|Caenorhabditis elegans Hypothetical
           protein C39B5.6 protein.
          Length = 397

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
 Frame = +3

Query: 462 LEQDSGKSLH---DAELKRSLVDLNRAGAPLIEVVFEPDLQDGEEAAALVKELVLIVQRL 632
           LEQDSGK++H    A    SL+D NRAG  L+E+V  P      EA   V+ L L++   
Sbjct: 38  LEQDSGKTIHMTSQAAPPTSLIDYNRAGCALVEIVTSPCFTTAIEAIRFVQILRLLLIHH 97

Query: 633 GACTGRMEEGALRVDANVSIRR 698
             C G +  G +RVDANVS+ +
Sbjct: 98  AICDGELHRGHIRVDANVSLAK 119


>AF047661-3|AAC04436.1|  198|Caenorhabditis elegans Hypothetical
           protein M70.2 protein.
          Length = 198

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = -1

Query: 718 VDKGSPGRRIETLASTRSAPSSIRPVHAPRRCTINTNSLTKAAASSPSCKSGSNTTSMSG 539
           +D+ S      T+AS R    + R      +    TNS  KAAA + +   G++TT+  G
Sbjct: 104 IDQSSKDPTRTTMASERGMTMTQRV--QKEKSIKKTNSELKAAADNQTVTQGNDTTTTQG 161

Query: 538 APALF 524
             +LF
Sbjct: 162 PSSLF 166


>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
            protein F40G12.3 protein.
          Length = 1099

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/44 (40%), Positives = 28/44 (63%)
 Frame = -1

Query: 673  TRSAPSSIRPVHAPRRCTINTNSLTKAAASSPSCKSGSNTTSMS 542
            T++A SS+  + +PR  T+NT       A+SP+  SG NTT++S
Sbjct: 946  TKTANSSVAEL-SPRT-TVNTGESATTKATSPT--SGGNTTTIS 985


>Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical
           protein C47B2.1 protein.
          Length = 488

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = -3

Query: 593 CSFFAIL*IWFKYNF--YEWSPCSIQVN*ASFKFCIMQRFPTVLFQLNLFYF*AFLVRLF 420
           CS+ ++L  +F  +F  +  + CS+      F FC++     ++ + N +         F
Sbjct: 23  CSYCSLLFYFFTVDFPYFFLTKCSLNFRITKF-FCVVFGSLNIILRCNDYG------SHF 75

Query: 419 VKSWCEYRLKFECRKNEV 366
           + +WC YR  +  RK E+
Sbjct: 76  LSTWCAYRALYFTRKVEI 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,476,367
Number of Sequences: 27780
Number of extensions: 282149
Number of successful extensions: 878
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)