Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30d05
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.9  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.9  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.9  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.9  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.9  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.9  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   6.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.9  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   8.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.9  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 566 WFKYNFYEWSPCSIQVN 516
           W K  F +W PC ++++
Sbjct: 294 WIKMLFLQWLPCLLRMS 310


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 566 WFKYNFYEWSPCSIQVN 516
           W K  F +W PC ++++
Sbjct: 294 WIKMLFLQWLPCLLRMS 310


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 566 WFKYNFYEWSPCSIQVN 516
           W K  F +W PC ++++
Sbjct: 294 WIKMLFLQWLPCLLRMS 310


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 566 WFKYNFYEWSPCSIQVN 516
           W K  F +W PC ++++
Sbjct: 294 WIKMLFLQWLPCLLRMS 310


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 566 WFKYNFYEWSPCSIQVN 516
           W K  F +W PC ++++
Sbjct: 294 WIKMLFLQWLPCLLRMS 310


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 566 WFKYNFYEWSPCSIQVN 516
           W K  F +W PC ++++
Sbjct: 294 WIKMLFLQWLPCLLRMS 310


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 566 WFKYNFYEWSPCSIQVN 516
           W K  F +W PC ++++
Sbjct: 362 WIKMLFLQWLPCLLRMS 378


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 566 WFKYNFYEWSPCSIQVN 516
           W K  F +W PC ++++
Sbjct: 362 WIKMLFLQWLPCLLRMS 378


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 362 PTLRSSYIQILIGIHTRIS 418
           P     Y+Q++  +HTRIS
Sbjct: 316 PLHMQKYVQMIHDLHTRIS 334


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/16 (37%), Positives = 14/16 (87%)
 Frame = +3

Query: 192 LITKILKKSKCDISLI 239
           L+ ++++ +KCD+SL+
Sbjct: 402 LVDELVRGTKCDVSLL 417


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 362 PTLRSSYIQILIGIHTRIS 418
           P     Y+Q++  +HTRIS
Sbjct: 316 PLHMQKYVQMIHDLHTRIS 334


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 513 LVDLNRAGAPLIEVVFEPDLQDGEEAAALVKELVLIVQRLGACT 644
           ++ L   G P I  VFEP L+  ++    V +  L+V  LG  T
Sbjct: 634 IMALGMIGEPKILSVFEPYLEGKQQMT--VFQRTLMVGSLGKLT 675


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 482 FPTVLFQLNLFYF*AFLVR 426
           FP     +N+FY+ A+L R
Sbjct: 431 FPLFFLAINVFYWFAYLSR 449


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 374 SSYIQILIGIHTRISQKALQE 436
           SS+   ++G H  I +K +QE
Sbjct: 357 SSFFLAVMGCHPDIQEKVIQE 377


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 566 WFKYNFYEWSPCSIQVN*ASFK 501
           W K  F  W PC ++++  S K
Sbjct: 331 WVKVVFLYWLPCILRMSRPSDK 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,791
Number of Sequences: 438
Number of extensions: 3528
Number of successful extensions: 25
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)