Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30d04
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p...    30   0.41 
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    29   0.96 
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    27   2.9  
SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.9  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   5.1  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    26   6.7  
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb...    26   6.7  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   8.9  

>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 254

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
 Frame = -1

Query: 571 VEPLAGKRNWLTVFSSSKVDSKLNKLSSWTT*HSVACSIKFSDSRTNILSTLKYCPLTFD 392
           V+ L+ K   +TVF+S++     ++L  W+  HS    IK        L + K   +  +
Sbjct: 23  VKELSNKEG-VTVFASARGPGSASELKDWSKTHSNVHIIKLD---VTSLRSAKDAAMQVE 78

Query: 391 SKVS*LSVVSID-GASKVLVSLLPLNKRLWVS 299
             V  + V+ ++ G SK    +L  +  LW+S
Sbjct: 79  KVVKCIDVLWVNSGISKSFQPVLKTSDELWMS 110


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 237 W*LNMMFDPPDYPYKELAEVYETQSLLFSGNNETKTLEAPSIDTTDNQLTLESNVSGQY 413
           W L  M   P  PY++ ++  +   L+F+  N TKT +   +   DN+      + G Y
Sbjct: 624 WGLWSMIRGPLAPYQKFSDQNDYIWLIFTNENTTKTYDMDCMRQVDNKFPPYPALLGPY 682


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
            family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +1

Query: 436  SENQKI*WNKLQNVMLSKMIIYLISNQLYLTKTLLTNFFYQLKVPQKQIEMNRMDPMCWL 615
            SEN  +  N L N   ++     ++  L +TK LL +     ++   ++E + + P+   
Sbjct: 893  SENSVV-VNSLHNYFFAEAHASSVTGVLSITKELLLSVSIDQRILLWKVEGDSLKPILER 951

Query: 616  YTHV 627
            YTHV
Sbjct: 952  YTHV 955


>SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 408 QYFNVESILVRESENLMEQATECYVVQDDNLFNFEST 518
           Q    E++L+R+  N +EQ ++CY    D++    +T
Sbjct: 74  QKLKQENVLLRKDLNNLEQISDCYAKGMDDIMKHVAT 110


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 604 SGPFCSSLFASVEPLAGKRNWLTVFS 527
           + PFC  LF+S E +     WL+V++
Sbjct: 132 NNPFCLMLFSSHEKMNYLHRWLSVYA 157


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -1

Query: 592 CSSLFASVEPLAGKRNWLTVFSSSKVDSKLNKLS 491
           C+SL +SV  L GKR  + + +   +DS+LN +S
Sbjct: 424 CNSL-SSVRKL-GKRKSIVIVAEGAIDSELNHIS 455


>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -1

Query: 613 ASTSGPFCSSLFASVEPLAGKRNWLTVFSSSKVDSKLNKLSSW 485
           +ST GP  S  FASV P    R + T   + +       LS W
Sbjct: 66  SSTLGPILSQAFASVHPGGTLRVYSTADEADESFEMTALLSGW 108


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 428 YIGPRIRKFNGTSYRMLCC 484
           Y+G +I+ FN  S+  LCC
Sbjct: 35  YLGNQIKAFNEWSHDFLCC 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,071,162
Number of Sequences: 5004
Number of extensions: 63399
Number of successful extensions: 182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)