Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30d04
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1154 + 30803983-30806047,30806152-30806968,30807362-308076...    33   0.25 
09_01_0048 + 833872-834122,834255-834314,834818-835112,835775-83...    29   3.1  
03_02_0693 - 10441253-10441294,10441404-10441511,10441594-104416...    29   3.1  
03_05_0215 - 22044146-22045549                                         29   5.3  
03_05_0513 - 25073518-25073623,25073719-25073777,25074048-250741...    28   7.1  
03_01_0542 + 4071906-4072241,4073093-4073184,4073275-4073317,407...    28   7.1  
03_06_0193 + 32243458-32243556,32243566-32244273                       28   9.3  

>03_05_1154 + 30803983-30806047,30806152-30806968,30807362-30807655,
            30808214-30808451
          Length = 1137

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 31/117 (26%), Positives = 48/117 (41%)
 Frame = +3

Query: 276  YKELAEVYETQSLLFSGNNETKTLEAPSIDTTDNQLTLESNVSGQYFNVESILVRESENL 455
            +KEL  + +      +G   T+ L  PS  T + +  L SNV  Q   ++ IL    +  
Sbjct: 899  FKELTYIRQELRNPLNGMQFTRNLLEPSDLTEEQRKLLASNVLCQE-QLKKIL---HDTD 954

Query: 456  MEQATECYVVQDDNLFNFESTLLDENTVNQFLLPAKGSTEANRDEQNGPDVLALHSC 626
            +E   +CY       FN E  L   NTV    +P     + + D     +V  +H C
Sbjct: 955  LESIEQCYTEMSTVDFNLEEAL---NTVLMQAMPQSKEKQISIDRDWPAEVSCMHLC 1008


>09_01_0048 +
           833872-834122,834255-834314,834818-835112,835775-835894
          Length = 241

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 125 SYLLIFIFINDNLWIVQEMPIVEKLLLKIGVKFPTNVLV 241
           SYL+IF+FIN  +W ++   I+ +L   +    P   L+
Sbjct: 90  SYLVIFMFINMLIWCLESAGILRQLANYLDANIPNADLI 128


>03_02_0693 - 10441253-10441294,10441404-10441511,10441594-10441677,
            10441765-10443062,10443111-10444804,10444890-10444957,
            10445057-10445186,10445292-10445415,10445551-10445711,
            10446714-10446868
          Length = 1287

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/77 (23%), Positives = 31/77 (40%)
 Frame = +3

Query: 255  FDPPDYPYKELAEVYETQSLLFSGNNETKTLEAPSIDTTDNQLTLESNVSGQYFNVESIL 434
            F PP  P      +++  +   S      TL  PSI  +D   T+   +  + FN++ +L
Sbjct: 1187 FSPPRVPTPPKYPLFQVTAHDRSMLKRAPTLVQPSIKLSDENNTILEQIKNKSFNLKPVL 1246

Query: 435  VRESENLMEQATECYVV 485
             +    +    T   VV
Sbjct: 1247 AKRPNMMGAPRTNLQVV 1263


>03_05_0215 - 22044146-22045549
          Length = 467

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = -1

Query: 424 STLKYCPLTFDSKVS*LSVVSIDGASKVLVSLLP 323
           S + +    +D  +  +SVV+ID ASK+++S++P
Sbjct: 396 SVMHFLTCDYDRMIRKMSVVTIDIASKIVLSVVP 429


>03_05_0513 -
           25073518-25073623,25073719-25073777,25074048-25074185,
           25074719-25074982,25075062-25075306,25075874-25076081
          Length = 339

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = +3

Query: 579 NRDEQNG----PDVLALHSCVICHEIFTTE 656
           N D+Q G    PD+   +SC +C ++F TE
Sbjct: 49  NGDQQEGNNESPDICKCNSCTLCDQMFFTE 78


>03_01_0542 +
           4071906-4072241,4073093-4073184,4073275-4073317,
           4073601-4073720,4073785-4073949,4074042-4074163,
           4074357-4074476,4074645-4074936
          Length = 429

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 294 LQLVLYRDSPVDRTSYLITKTLVGNLTPI 208
           L  V ++ +PVD T Y + +T++GN  PI
Sbjct: 225 LTTVYHKLTPVDSTPYTLFQTIIGNGYPI 253


>03_06_0193 + 32243458-32243556,32243566-32244273
          Length = 268

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/68 (23%), Positives = 29/68 (42%)
 Frame = +3

Query: 288 AEVYETQSLLFSGNNETKTLEAPSIDTTDNQLTLESNVSGQYFNVESILVRESENLMEQA 467
           + +   +   FSG  +        I+  D +  +  N   + F+ E  L  + E+L +  
Sbjct: 138 SNIAAAEDTTFSGEEDLDDETNDDIECFDEEDGICENPDDEIFDDEEELDDDDESLDDDD 197

Query: 468 TECYVVQD 491
            ECY V+D
Sbjct: 198 IECYDVED 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,413,221
Number of Sequences: 37544
Number of extensions: 321790
Number of successful extensions: 735
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)