Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30d02
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0646 + 5474234-5476189 34 0.13
03_03_0277 + 16116017-16117424,16117461-16117660,16117739-161178... 31 1.2
05_04_0077 - 17712043-17712246,17712487-17712522,17712746-177129... 30 1.6
05_03_0071 - 8044217-8045142,8045303-8045411,8045634-8046854 30 1.6
11_08_0085 + 28264399-28266186 29 3.8
08_01_0469 - 4127950-4127988,4127989-4128264,4128845-4130861,413... 29 3.8
01_06_0994 + 33653055-33653144,33653219-33653310,33653483-336535... 29 5.0
09_03_0042 + 11842263-11842698,11842799-11842896,11843082-118432... 28 6.6
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688... 28 6.6
11_03_0148 + 10762150-10762264,10762347-10762776,10764653-107647... 28 8.8
03_02_0855 + 11809135-11809348,11809425-11809501,11809625-118096... 28 8.8
>12_01_0646 + 5474234-5476189
Length = 651
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = +3
Query: 483 QKERAEDAWKQYINELKCKHGYNSRADDFRVPEGKADDYPDICDLYNTRFSWNQSRQCQN 662
+ ERA+DA ++Y++ L K + + +FR + +Y + DL + +W S +C
Sbjct: 493 EAERAQDAAEEYLDLLNRKSFFELKLRNFRFGRNECHEYFVMHDLMHDLATWVSSGECAR 552
Query: 663 LLE 671
+ +
Sbjct: 553 IAD 555
>03_03_0277 +
16116017-16117424,16117461-16117660,16117739-16117816,
16118381-16118533,16118969-16119280,16119390-16119563,
16120411-16120498,16120598-16120611
Length = 808
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +3
Query: 93 NSNINNCKKRKHDHR-IFEHNSNCKLIDLNTNAKRVIEVHDSNGINNKIKTREITDEINV 269
+SN NN H H ++E K+ L+ +++ + S+ K+KT +E
Sbjct: 344 SSNSNNNSLTMHIHLPVYE-----KVASLSGGSEKTVNQPTSHDNKMKLKTYSTQEEAVS 398
Query: 270 HNTEACSTETYKQLVDVPT 326
H+ TE +K+ +D PT
Sbjct: 399 HSASHNKTEMHKRSLDFPT 417
>05_04_0077 - 17712043-17712246,17712487-17712522,17712746-17712900,
17713431-17713591,17713950-17714110,17714188-17715657,
17715704-17715998,17716461-17717737,17717826-17718137,
17718223-17718356,17718449-17718521,17719994-17720059,
17720748-17720936
Length = 1510
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +3
Query: 81 LDKYNSNINNCKKR---KHDHRIFEHNSNCKLIDLNTNAKRVIEVHDSNGINNKI 236
L +YNSN ++ K KH ++ N + IDL TN V G+NNK+
Sbjct: 1169 LPQYNSNQSDQAKLSSGKHPTQVRPDKGNVEYIDLKTNPSTVAGSKLLPGLNNKV 1223
>05_03_0071 - 8044217-8045142,8045303-8045411,8045634-8046854
Length = 751
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = +3
Query: 303 KQLVDVPTELNEYLIDIGKCAEKSTYCRPAIDYYSQAFVFKTMSRNARLQRLLKNIVV-- 476
+++ +P +LN Y+ D+GK E T R D +SR + RLLK ++V
Sbjct: 629 EEMNQLPFQLNRYISDVGK-DENFTNLRSLADLSMMLVKTNKVSRYDLVYRLLKLVLVLP 687
Query: 477 --SRQKERAEDAWKQYINELKCKHG 545
+ ER + N+L+ K G
Sbjct: 688 VATAGVERVFSSMNYIKNKLRSKMG 712
>11_08_0085 + 28264399-28266186
Length = 595
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +3
Query: 213 SNGINNKIKTREITDEINVHNTEACSTETYKQLVDVPTELNEYLIDIGKCAEKS 374
+N + RE+ DE+ +H+ E C + K +D+ E ++ + GK S
Sbjct: 157 TNAGTEEAGARELLDELMLHSHETCIKDMEKLRIDMDNEADKTIKKKGKKGSSS 210
>08_01_0469 -
4127950-4127988,4127989-4128264,4128845-4130861,
4131134-4131987
Length = 1061
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 634 VGTNQDNARICLKIFMDLTKDSRDVLNLKIVD 729
VG N + ++ I MDL K S + LNLK++D
Sbjct: 238 VGQNPNIRKVFRDILMDLDKQSYNDLNLKLLD 269
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +3
Query: 468 IVVSRQKERAEDAWKQYINELKCKHGYNSRADDFR 572
I+ S + + W + N + +HGYN D+ R
Sbjct: 382 IIASLLANKPREYWSEVYNSIGLEHGYNDDVDNTR 416
>01_06_0994 +
33653055-33653144,33653219-33653310,33653483-33653580,
33653758-33653913,33654009-33654628,33654721-33654794,
33654905-33655156,33655250-33655367,33655468-33655639,
33655729-33656270
Length = 737
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = +1
Query: 508 GNNTSMN*NVSMGIILELMTSGYPKVKPMTIRTYVICTIHDLVGTNQDNARICLKIFMDL 687
G N + N G+I ++ S Y K I+T V C L G + + I L +
Sbjct: 585 GGNINPNRAADPGLIYDIDPSDYNKFFGCIIKTSVSCNATTLPGYHLNLPSIALPDLRNP 644
Query: 688 TKDSRDVLNL 717
T SR V N+
Sbjct: 645 TTVSRTVTNV 654
>09_03_0042 +
11842263-11842698,11842799-11842896,11843082-11843217,
11843349-11843509,11843603-11843753,11843855-11843952,
11844142-11844277,11844404-11844532,11844622-11844720,
11844814-11844909,11845002-11845100,11845201-11845296,
11846394-11846628,11846752-11846873,11846993-11847114,
11847275-11847345,11847940-11848027,11848374-11848439,
11848676-11848795
Length = 852
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/75 (24%), Positives = 30/75 (40%)
Frame = +3
Query: 474 VSRQKERAEDAWKQYINELKCKHGYNSRADDFRVPEGKADDYPDICDLYNTRFSWNQSRQ 653
VS KE+++ + + + E P GK + +C LYN SW ++
Sbjct: 677 VSNAKEQSQGSTRNHQTESSKDSAPAMCTTSSDPPSGKGETADQVCILYN--LSWKKTAV 734
Query: 654 CQNLLEDFYGSYERQ 698
C+ L Y E +
Sbjct: 735 CEFKLSSDYRVVEEK 749
>05_06_0191 -
26265460-26267016,26267858-26268356,26268789-26268859,
26269079-26269515,26269626-26269681,26269682-26270479,
26270918-26270973
Length = 1157
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 438 NARLQRLLKNIVVSRQKERAEDAWKQYINELKCKHGYNSR 557
NA +RLL I +SR + E+ W+ Y +EL+ HG + R
Sbjct: 271 NAFHKRLLLVIELSRYAD--EEKWRLYSSELRMPHGTHLR 308
>11_03_0148 +
10762150-10762264,10762347-10762776,10764653-10764735,
10764980-10765068,10765178-10765251,10765333-10765383,
10765687-10765763,10766237-10767012
Length = 564
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 63 YDEQFFLDKYNSNINNCKKRKHDHRIFEHNSNCKLIDLNTNAKRVIEVHDSNGINN 230
YD + ++ N I R+ +H N I++NT V+ H +NG+ N
Sbjct: 337 YDVKSIIESSNLPIGTGTTRRLKDSS-DHTDNVMDINVNTEPNNVVSSHFTNGVGN 391
>03_02_0855 +
11809135-11809348,11809425-11809501,11809625-11809682,
11809753-11809840,11809910-11809979,11810171-11810728
Length = 354
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +3
Query: 24 ISVISYKMNNKTYYDEQFFLDKYNSNINNCKKRKHDHRIFEHNSNCKLIDLNTN 185
I +S+ M+ K E FLDK N +N +R F + +DLN N
Sbjct: 281 IGCMSFDMHVKERGSEDLFLDKLNRRPSNHPERCERRGGFSMSCQTANLDLNMN 334
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,796,146
Number of Sequences: 37544
Number of extensions: 325491
Number of successful extensions: 839
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -