Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30c16
         (110 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75549-2|CAA99916.1|  313|Caenorhabditis elegans Hypothetical pr...    25   5.4  
AF040641-2|AAB94946.1|  311|Caenorhabditis elegans Hypothetical ...    25   9.4  

>Z75549-2|CAA99916.1|  313|Caenorhabditis elegans Hypothetical
           protein T19C4.2 protein.
          Length = 313

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 17  IWFVLFSFPNTKLHAYFHLYCI 82
           I FVL  +PN+ +++ FH Y +
Sbjct: 228 ITFVLNEYPNSPMYSTFHTYVL 249


>AF040641-2|AAB94946.1|  311|Caenorhabditis elegans Hypothetical
          protein D1069.1 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 18 YGLFCLVSLILNYMRIFT 71
          YGLF ++ LIL  + IFT
Sbjct: 9  YGLFLILGLILTLVAIFT 26


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,490
Number of Sequences: 27780
Number of extensions: 18656
Number of successful extensions: 50
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 12,740,198
effective HSP length: 18
effective length of database: 12,240,158
effective search space used: 220322844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)