Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30c15
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   3.3  
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    27   3.3  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    27   3.3  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    26   5.7  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    25   9.9  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   9.9  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   9.9  

>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -3

Query: 568  R*STSGIVYPFYHILPDSEASPLSNFLECLLEAARCVYQKLITD*SLSITNK 413
            R +   +   F+HI     ++ L  FLE LL A+    Q  +TD S  +++K
Sbjct: 1207 RIARESVAVSFFHISKYLSSNLLLPFLEFLLTASEAEAQIPVTDASQKVSSK 1258


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +2

Query: 113 SWNLLVIIVIY*RTKLFYKNHSLFIINSNKRPVFLLSNHTEKSLNRLLRFSASRVF 280
           SWN  + ++ Y R    Y N +  +  S+  P  ++ N + ++ +     S+S +F
Sbjct: 220 SWNQPIHLITYYRYLRLYPNSTCIVYQSSNEPNDVVRNFSVQNTSLFSPMSSSPMF 275


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = -1

Query: 369 NLIISSIFTSTIQNLTWRVRERCFHIPHQKKTRLAENLSSRFKLFSV*LLSKNTGLL 199
           NL+++S   STI   T  + E   ++   KKT++A N S++ K  +V  L K  G L
Sbjct: 434 NLLLASADPSTISVRTKFMVESITNLKENKKTKVA-NASAQSKFEAVNQLKKFLGSL 489


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = +1

Query: 454 DKHIEQLQEGIPGNWI-----KGWLQSQEECGRTDTLFLTWIISIKSFEQLNRVETVLFV 618
           DKH++QLQ  +    +     K +L+   +C RT           KSF +LN ++T +  
Sbjct: 110 DKHVKQLQAAVDSGTLKIVDEKKYLREISQCNRTR----------KSFVELNALQTSIDT 159

Query: 619 VGNILS 636
           + N L+
Sbjct: 160 IRNELN 165


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 97  GLIYSITPDLKIIATYFKNTSNIV 26
           G IYSI  D   I +YF N+ N++
Sbjct: 37  GSIYSIYVDKWSITSYFGNSKNLI 60


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = -1

Query: 534 TTFFLTLKPALYPISWN-----AFLKLLDVFIKNSLLTDLFQ*LTKNAVNIFK*FNG 379
           +TF   + P L PIS+N     A  K++D+      ++ +   L  N V + K  NG
Sbjct: 410 STFIQIIAPKLVPISFNMHGTRALQKIIDLVSSPDQISCIVNALRPNVVLLTKDLNG 466


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 541 PFYHILPDSEASPLSNFLECLLEAARCVYQKLIT-D*SLSITN 416
           PF+++     +SP+SNF E   E A  V+ + I+   SLS+ N
Sbjct: 778 PFHNLKISGASSPVSNFWES--EFASAVFPRSISKTTSLSVNN 818


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,938
Number of Sequences: 5004
Number of extensions: 54415
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)