Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30c14
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   1.6  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    27   2.7  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    25   8.4  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -2

Query: 205  LRFFQWTFWRIPRSYVERLCFIFLHSCTFTDIKHLINHHYYTFKPEETLNRQIKT 41
            L + Q  F RI +++  ++C + +      DI H  +  +Y  + E+  N   KT
Sbjct: 1420 LNYSQSLFVRIQKNFSNQMCLLSIQYRMHPDISHFPSKKFYDSRLEDGDNMAEKT 1474


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 405 HAMFYIKLISLISFHNIIFHKKIYKTLGCMVGYLCL 512
           +A F I  ISL+  +   +H +I + L C + YLCL
Sbjct: 438 YADFTIIAISLLVQYTKDYHSEIAQMLCCSLCYLCL 473


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 133 HSCTFTDIKHLINHHYYTFK 74
           HSC  T + HL+ +H   FK
Sbjct: 138 HSCIQTAVSHLLRNHQALFK 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,918
Number of Sequences: 5004
Number of extensions: 51749
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)