Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30c13
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0676 - 35460281-35460648,35462097-35462382 32 0.49
03_02_0317 - 7414477-7414555,7414646-7414701,7415877-7416024,741... 31 0.64
04_04_0411 - 25014511-25015015,25015098-25015169,25015700-250157... 29 2.6
12_02_0437 - 19084990-19087695 29 3.4
08_01_1001 + 10162020-10162433,10162851-10163102 29 4.5
03_05_0472 - 24655384-24655764,24655904-24656119,24656197-246563... 28 6.0
09_04_0736 - 19815427-19815642,19815782-19816903,19817006-198177... 28 7.9
07_01_0436 + 3317334-3317423,3317561-3317908,3317996-3318331,331... 28 7.9
03_02_1029 - 13488535-13493037 28 7.9
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 28 7.9
>03_06_0676 - 35460281-35460648,35462097-35462382
Length = 217
Score = 31.9 bits (69), Expect = 0.49
Identities = 24/77 (31%), Positives = 33/77 (42%)
Frame = +1
Query: 451 GFALFLLVVIRRLVQMISQLATLLAQSEANFXXXXXXXXXXXXLLEKQGTGEEQSKKEIE 630
GF LFL VI RL + +L TL + + EK EE+S EI+
Sbjct: 96 GFTLFLAFVIDRLHHYLRKLITLRKAANTSREEVEKLQMENRLFREK----EEKSSSEIK 151
Query: 631 DLRTQILNLEKELSKEK 681
L +I L + + K K
Sbjct: 152 KLHQEIAKLNESMKKLK 168
>03_02_0317 -
7414477-7414555,7414646-7414701,7415877-7416024,
7416376-7416380,7416512-7416594,7416707-7416878
Length = 180
Score = 31.5 bits (68), Expect = 0.64
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 139 MSLQWTIIATFLYTEIAVVLLLTLPIASPSRWQ 237
M+LQW I+A + E AV ++LTLP R Q
Sbjct: 1 MALQWMILACVVAAEAAVAVMLTLPAPRAVRKQ 33
>04_04_0411 -
25014511-25015015,25015098-25015169,25015700-25015734,
25015805-25015873,25015993-25016044,25016444-25016526,
25016625-25016726,25017150-25017884,25017962-25018012,
25018792-25018983,25019066-25019216,25020012-25020193,
25020329-25020532,25020752-25020859
Length = 846
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 136 FHYFFNTVISYTMQQTIVEEQQTMTKFLGQE 44
FH+FF T IS T Q+ ++ +T+ KF+ E
Sbjct: 157 FHHFFRT-ISNTHQENVITSMETVMKFVIDE 186
>12_02_0437 - 19084990-19087695
Length = 901
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 344 RCKNIQILNRQTTSISTPKCKVT-*DCFVHRETSTYLALHFSSLSSSVVWFK*FH 505
R KN+Q L+ + TS+S C++T C H ST L+ +S S +V + H
Sbjct: 626 RLKNLQTLHLRRTSVSELPCEITLLACLRHLSVST--DLYGTSFSGNVYGLRSLH 678
>08_01_1001 + 10162020-10162433,10162851-10163102
Length = 221
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/62 (35%), Positives = 26/62 (41%)
Frame = -3
Query: 285 RCLPAYVS*KFRFEELLPSARTGYRQS*KEDDCDLGIEKRRDNCPLQTHDFTISLTPLLA 106
RCLPA EE +G Q KE DLG KRR HD + L ++A
Sbjct: 26 RCLPA-------IEEKRKQQCSGNEQEGKEGRNDLGFRKRRRCWKQDDHDMAMKLNLVVA 78
Query: 105 IQ 100
Q
Sbjct: 79 EQ 80
>03_05_0472 -
24655384-24655764,24655904-24656119,24656197-24656321,
24656432-24656621,24656817-24656911,24657230-24657454,
24657940-24658003
Length = 431
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -1
Query: 437 FLCARNNLMLPCISASRCWWSDGSIFE--YFCISRIASSRHNTSTPMR 300
F+CA +P +SA R W ++F Y I+ + S R +TP +
Sbjct: 151 FVCALFAFGIPYLSALRIWLGLSTVFSLIYIMIAFVMSLRDGITTPAK 198
>09_04_0736 -
19815427-19815642,19815782-19816903,19817006-19817707,
19817808-19817855,19817959-19818201,19819035-19819391
Length = 895
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +1
Query: 349 QKYSNIEPSDHQHLDAEMQGNMR 417
++YS I PS++ H DA+ +G++R
Sbjct: 594 RRYSMITPSNNHHRDADHRGSLR 616
>07_01_0436 +
3317334-3317423,3317561-3317908,3317996-3318331,
3318384-3318442,3318640-3318709,3319259-3319579
Length = 407
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 192 DCDLGIEKRRDNCPLQTHDFT-ISLTPLL 109
DC +EK NC L T DFT S+TPL+
Sbjct: 221 DCCPVLEKIEMNCDLATLDFTGSSMTPLI 249
>03_02_1029 - 13488535-13493037
Length = 1500
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 162 RDVSLYRDRSRPPFNFADSQSEQMAEVLQIEISSL 266
R V+LYR +P FA S + +E+ QIE+S +
Sbjct: 494 RTVTLYRGPEQPVVFFAPPTSVRSSELHQIELSEI 528
>03_02_0735 +
10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 598 TGEEQSKKEIEDLRTQI 648
TG EQ KK++ED RTQ+
Sbjct: 850 TGSEQVKKQLEDWRTQL 866
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,104,739
Number of Sequences: 37544
Number of extensions: 305365
Number of successful extensions: 730
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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