Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30c06
         (404 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0024 + 25014274-25014375,25014655-25014720,25015117-250152...    63   9e-11
05_03_0483 + 14585581-14587977                                         31   0.35 
11_06_0617 - 25552308-25552978,25553384-25553454,25553691-255537...    28   3.2  
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867...    27   7.5  
08_02_1219 + 25363122-25363250,25363310-25363495,25363772-25363795     27   7.5  
05_03_0436 + 14006683-14006863,14007618-14008036                       27   7.5  

>05_06_0024 +
           25014274-25014375,25014655-25014720,25015117-25015233,
           25015757-25015834,25015911-25016016,25016150-25016196,
           25016386-25016463,25016898-25016963,25017102-25017165,
           25017406-25017428
          Length = 248

 Score = 62.9 bits (146), Expect = 9e-11
 Identities = 24/48 (50%), Positives = 38/48 (79%)
 Frame = +3

Query: 261 HRDTPEDNPSIPFEFSQANQKRVEALLAIYPEGHKRGAMIPLLDLAQR 404
           H D+PE+NP +P+EF++AN K+V  +L+ YP  +K+  +IP+LDLAQ+
Sbjct: 35  HLDSPENNPDMPWEFTEANMKKVNEILSHYPSNYKQSGIIPMLDLAQQ 82


>05_03_0483 + 14585581-14587977
          Length = 798

 Score = 31.1 bits (67), Expect = 0.35
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 161 FFDCIXICYKSYIAKHCSRTDSFCSQLQLKLHISLIXLC 45
           F  CI IC +  +AKH  +TD  C   Q +L+ S   LC
Sbjct: 414 FCVCI-ICRRKKVAKHSGKTDKKCLTYQTELYKSPSNLC 451


>11_06_0617 -
           25552308-25552978,25553384-25553454,25553691-25553727,
           25553807-25553927,25554309-25554428,25554834-25555130,
           25555286-25555288
          Length = 439

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 402 VVPDPVKESWHLACDLQGKWPTKPLLSFD 316
           VV D V +S HLA +  G W + P   FD
Sbjct: 314 VVADVVMDSVHLAIEFTGNWSSHPDDHFD 342


>11_04_0307 +
           16185405-16185713,16185847-16185942,16186626-16186730,
           16186938-16187090,16188395-16188478,16188566-16188694,
           16188986-16189165,16189555-16189677,16189678-16189794,
           16189889-16190053
          Length = 486

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 258 VHRDTPEDNPSIPFEFSQANQKRVEALLAIY 350
           + RD    +P +PF  ++ANQ+ +  +L I+
Sbjct: 229 IDRDVKRTHPEMPFFSAKANQESLRRVLIIF 259


>08_02_1219 + 25363122-25363250,25363310-25363495,25363772-25363795
          Length = 112

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 173 AG*HFFDCIXICYKSYIAKHCSRTDSFCSQLQLKLH 66
           AG + FD I +    + A   SR D+F  +L + LH
Sbjct: 11  AGDNIFDAIAVAASDHPAALRSRRDAFAQRLYMLLH 46


>05_03_0436 + 14006683-14006863,14007618-14008036
          Length = 199

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 321 KRVEALLAIYPEGHKRGAMIPLLDLAQ 401
           KR+EAL  ++  G + G ++ LLDLA+
Sbjct: 142 KRMEALHYMFEYGQEEGHIVVLLDLAK 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,243,891
Number of Sequences: 37544
Number of extensions: 188950
Number of successful extensions: 383
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)