Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30c06
(404 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77663-9|CAB01203.1| 239|Caenorhabditis elegans Hypothetical pr... 76 8e-15
AC087794-4|AAG53704.1| 275|Caenorhabditis elegans Hypothetical ... 28 2.9
AC024200-16|AAF36003.1| 511|Caenorhabditis elegans Hypothetical... 27 3.9
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 27 6.8
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 27 6.8
U61945-5|AAB03128.1| 517|Caenorhabditis elegans Hypothetical pr... 27 6.8
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 27 6.8
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 26 9.0
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 26 9.0
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 26 9.0
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 26 9.0
AL132952-13|CAB61154.2| 283|Caenorhabditis elegans Hypothetical... 26 9.0
AF016415-9|AAW88416.1| 297|Caenorhabditis elegans Serpentine re... 26 9.0
>Z77663-9|CAB01203.1| 239|Caenorhabditis elegans Hypothetical
protein F53F4.10 protein.
Length = 239
Score = 76.2 bits (179), Expect = 8e-15
Identities = 32/51 (62%), Positives = 43/51 (84%)
Frame = +3
Query: 252 LFVHRDTPEDNPSIPFEFSQANQKRVEALLAIYPEGHKRGAMIPLLDLAQR 404
L VHRDT E+N ++ F+F+ NQ+R++A++ IYPEGHK GA+IPLLDLAQR
Sbjct: 27 LMVHRDTKENNLNVKFKFTSENQERIKAIMDIYPEGHKAGALIPLLDLAQR 77
>AC087794-4|AAG53704.1| 275|Caenorhabditis elegans Hypothetical
protein Y32G9A.5 protein.
Length = 275
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 184 EYRACGVYPLGQFXPQHQGNMTVYLST 264
+Y YPLG PQ+ GN + ST
Sbjct: 227 QYLGSSQYPLGSDAPQYPGNYNAFAST 253
>AC024200-16|AAF36003.1| 511|Caenorhabditis elegans Hypothetical
protein Y71F9AL.2 protein.
Length = 511
Score = 27.5 bits (58), Expect = 3.9
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Frame = +3
Query: 141 NXNTIKKMLSSLRTGVQGLWXXXXXXXXXXXXXQHDSLFVHRDTPEDNPSIPFE-FSQAN 317
N +K ++ G W HD+ FVHRD N +I F S+
Sbjct: 122 NLKVLKSQSTNPEVWSDGTWSRVGIQCLFAIKVMHDAGFVHRDIKPSNFAIGFSATSEIR 181
Query: 318 QKRV 329
+R+
Sbjct: 182 SRRI 185
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 327 LSFDWPARTQRECSGCPQECLGGQIDC 247
+SFD R R+C EC GQ DC
Sbjct: 1314 VSFDRVTRPGRKCKRLINECQTGQNDC 1340
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 327 LSFDWPARTQRECSGCPQECLGGQIDC 247
+SFD R R+C EC GQ DC
Sbjct: 1898 VSFDRVTRPGRKCKRLINECQTGQNDC 1924
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 327 LSFDWPARTQRECSGCPQECLGGQIDC 247
+SFD R R+C EC GQ DC
Sbjct: 1314 VSFDRVTRPGRKCKRLINECQTGQNDC 1340
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 327 LSFDWPARTQRECSGCPQECLGGQIDC 247
+SFD R R+C EC GQ DC
Sbjct: 1898 VSFDRVTRPGRKCKRLINECQTGQNDC 1924
>U61945-5|AAB03128.1| 517|Caenorhabditis elegans Hypothetical
protein C49C8.1 protein.
Length = 517
Score = 26.6 bits (56), Expect = 6.8
Identities = 13/45 (28%), Positives = 18/45 (40%)
Frame = +3
Query: 192 GLWXXXXXXXXXXXXXQHDSLFVHRDTPEDNPSIPFEFSQANQKR 326
G W HDS FVHRD N +I + + ++ R
Sbjct: 123 GTWSRIGIQCLYAMKMMHDSGFVHRDIKPSNFAIGYSTASESRSR 167
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 327 LSFDWPARTQRECSGCPQECLGGQIDC 247
+SFD R R+C EC GQ DC
Sbjct: 1898 VSFDRVTRPGRKCKRLINECQTGQNDC 1924
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 26.2 bits (55), Expect = 9.0
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = -3
Query: 351 GKWPTKPLLSFDWPART---QRECSGCPQECLGGQIDC 247
G W T P ++ P +R+CS P C GGQ C
Sbjct: 60 GAWSTCPTVTVIDPTVVSVRKRDCSKSPLFCSGGQDTC 97
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 26.2 bits (55), Expect = 9.0
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = -3
Query: 351 GKWPTKPLLSFDWPART---QRECSGCPQECLGGQIDC 247
G W T P ++ P +R+CS P C GGQ C
Sbjct: 60 GAWSTCPTVTVIDPTVVSVRKRDCSKSPLFCSGGQDTC 97
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 26.2 bits (55), Expect = 9.0
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = -3
Query: 351 GKWPTKPLLSFDWPART---QRECSGCPQECLGGQIDC 247
G W T P ++ P +R+CS P C GGQ C
Sbjct: 60 GAWSTCPTVTVIDPTVVSVRKRDCSKSPLFCSGGQDTC 97
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 26.2 bits (55), Expect = 9.0
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = -3
Query: 351 GKWPTKPLLSFDWPART---QRECSGCPQECLGGQIDC 247
G W T P ++ P +R+CS P C GGQ C
Sbjct: 60 GAWSTCPTVTVIDPTVVSVRKRDCSKSPLFCSGGQDTC 97
>AL132952-13|CAB61154.2| 283|Caenorhabditis elegans Hypothetical
protein Y51H4A.22 protein.
Length = 283
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 243 HDSL-FVHRDTPEDNPSIPFEFSQANQK 323
HDS+ + +DTP+D + F+F Q +K
Sbjct: 137 HDSVQYKVKDTPKDTLQVVFKFEQTTKK 164
>AF016415-9|AAW88416.1| 297|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 36 protein.
Length = 297
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = -3
Query: 345 WPTKPLLSFD--WPARTQRECSGCPQECL 265
WPT P+ SFD P + +GC E L
Sbjct: 238 WPTAPIFSFDHVGPYNAALKITGCAIEAL 266
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,857,582
Number of Sequences: 27780
Number of extensions: 165948
Number of successful extensions: 365
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -