Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30c06
(404 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase ... 22 2.3
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 22 3.0
AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter... 22 3.0
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 21 4.0
DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex det... 21 4.0
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 21 4.0
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 21 4.0
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 21 4.0
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 21 4.0
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 21 4.0
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 21 4.0
DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 21 4.0
DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. 21 4.0
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 21 5.3
DQ435333-1|ABD92648.1| 135|Apis mellifera OBP16 protein. 20 9.3
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 20 9.3
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 20 9.3
>AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase
protein.
Length = 628
Score = 22.2 bits (45), Expect = 2.3
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -2
Query: 52 YCAF*NQYIPXL 17
YCAF N+++P L
Sbjct: 573 YCAFWNEFLPKL 584
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 21.8 bits (44), Expect = 3.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 119 SQYNFYSKLXYNQKNVIQ 172
+ YN Y KL YN N+ Q
Sbjct: 344 NNYNNYKKLYYNIINIEQ 361
>AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter
Am-EAAT protein.
Length = 543
Score = 21.8 bits (44), Expect = 3.0
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -2
Query: 238 LDAVVXIDLEDIRHKPCTPVLRLDNI 161
++ + ++ E I HK TP+ RL +
Sbjct: 31 IEKITTVEEEKICHKAITPLDRLQRV 56
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.4 bits (43), Expect = 4.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 110 NSVSQYNFYSKLXYN 154
N+ + YN Y KL YN
Sbjct: 98 NNNNNYNNYKKLYYN 112
>DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 21.4 bits (43), Expect = 4.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 110 NSVSQYNFYSKLXYN 154
N+ + YN Y KL YN
Sbjct: 98 NNNNNYNNYKKLYYN 112
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.4 bits (43), Expect = 4.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 110 NSVSQYNFYSKLXYN 154
N+ + YN Y KL YN
Sbjct: 98 NNNNNYNNYKKLYYN 112
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.4 bits (43), Expect = 4.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 110 NSVSQYNFYSKLXYN 154
N+ + YN Y KL YN
Sbjct: 98 NNNNNYNNYKKLYYN 112
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.4 bits (43), Expect = 4.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 110 NSVSQYNFYSKLXYN 154
N+ + YN Y KL YN
Sbjct: 98 NNNNNYNNYKKLYYN 112
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.4 bits (43), Expect = 4.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 110 NSVSQYNFYSKLXYN 154
N+ + YN Y KL YN
Sbjct: 98 NNNNNYNNYKKLYYN 112
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.4 bits (43), Expect = 4.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 110 NSVSQYNFYSKLXYN 154
N+ + YN Y KL YN
Sbjct: 98 NNNNNYNNYKKLYYN 112
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.4 bits (43), Expect = 4.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 110 NSVSQYNFYSKLXYN 154
N+ + YN Y KL YN
Sbjct: 98 NNNNNYNNYKKLYYN 112
>DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.4 bits (43), Expect = 4.0
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +2
Query: 86 VSKTNLFANSVSQYNFYSKLXYNQKN 163
+S + N+ +YN+ +K YN N
Sbjct: 85 LSNKTIHNNNNYKYNYNNKYNYNNNN 110
>DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein.
Length = 471
Score = 21.4 bits (43), Expect = 4.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 380 NHGTSLVTFRVNGQQSLYSLL 318
N+G S R GQQ+ Y LL
Sbjct: 383 NYGISAGLNRTAGQQAAYQLL 403
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic
acetylcholine receptor alpha9subunit protein.
Length = 431
Score = 21.0 bits (42), Expect = 5.3
Identities = 7/18 (38%), Positives = 9/18 (50%)
Frame = -3
Query: 57 HXTVRSKTSTYXYCQYIP 4
H T K Y +C+Y P
Sbjct: 40 HPTTLLKLKRYLFCEYDP 57
>DQ435333-1|ABD92648.1| 135|Apis mellifera OBP16 protein.
Length = 135
Score = 20.2 bits (40), Expect = 9.3
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = +1
Query: 10 VLAIXVCTGFRTHSXM 57
+ AI VC G TH +
Sbjct: 7 IFAICVCVGAMTHEEL 22
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 20.2 bits (40), Expect = 9.3
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2
Query: 310 CENSKGMLGLSSGVSRWTNR 251
C NS+ S +SR +NR
Sbjct: 21 CSNSQSQRSSGSSISRNSNR 40
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 20.2 bits (40), Expect = 9.3
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2
Query: 310 CENSKGMLGLSSGVSRWTNR 251
C NS+ S +SR +NR
Sbjct: 21 CSNSQSQRSSGSSISRNSNR 40
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,993
Number of Sequences: 438
Number of extensions: 1970
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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