Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30c01
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    27   2.1  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   2.7  
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    27   3.6  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    26   4.8  
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    26   4.8  

>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 553 PLKDLTEIAPNEDPYVDCDPLVF 621
           PLK++T + P +DP +  + LV+
Sbjct: 314 PLKNITSLLPKQDPLISTEILVY 336


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
 Frame = +1

Query: 472 SEPD-EPLEPK--PALKVQRKGDVFTIQVNPLKDLTEIAPNEDPYVDCDPLVFKIIKKRS 642
           SE D E LE +   A +++ + + + I +   + ++     E    + DP+V ++ ++ +
Sbjct: 651 SETDIEALERRLSKAYRMEAQEEAYAINIGGGRVISPEELEEIARRNVDPMVSELSERAA 710

Query: 643 PEEQAKVEARKMVKLKKQRDAEIR 714
            E + K +A++  +LKK    E R
Sbjct: 711 QERERKEQAKEAKRLKKLAKEEKR 734


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 559 KDLTEIAPNEDPYVDCDPLVFKIIKKRSPEEQAKV 663
           K LT I   + P  +CDP V+KI++     ++  +
Sbjct: 6   KVLTIIKLLKAPLAECDPTVYKILESEKSRQKESI 40


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 316 LQECLPHSTATPFWLAPVNL 257
           L   L     TP+WLAP+NL
Sbjct: 742 LSTSLEQQIPTPYWLAPLNL 761


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 469 DSEPDEPLEPKPALKVQRKGDVFTIQVNPLKDLTEIAPNED 591
           D E D  +E + AL++QRK      + + + D+++ A N D
Sbjct: 136 DDEFDARMEEQEALRLQRKRLEKVSETDAIDDISQWADNSD 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,650,958
Number of Sequences: 5004
Number of extensions: 44586
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)