Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30b24
         (497 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O27243 Cluster: Conserved protein; n=1; Methanothermoba...    33   2.7  
UniRef50_Q7QV55 Cluster: GLP_435_15509_25057; n=1; Giardia lambl...    33   4.7  
UniRef50_Q54K51 Cluster: Putative uncharacterized protein; n=1; ...    32   6.2  

>UniRef50_O27243 Cluster: Conserved protein; n=1;
           Methanothermobacter thermautotrophicus str. Delta H|Rep:
           Conserved protein - Methanobacterium thermoautotrophicum
          Length = 124

 Score = 33.5 bits (73), Expect = 2.7
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -3

Query: 276 GPRRKRVLNILGIRLYQQSGRSSQGELTLF-QGSAQRVR 163
           GP    VLN LGI++Y+ +G S +  L LF +G+ + +R
Sbjct: 75  GPNAFEVLNELGIKIYRATGTSVEENLKLFTEGNLEEIR 113


>UniRef50_Q7QV55 Cluster: GLP_435_15509_25057; n=1; Giardia lamblia
           ATCC 50803|Rep: GLP_435_15509_25057 - Giardia lamblia
           ATCC 50803
          Length = 3182

 Score = 32.7 bits (71), Expect = 4.7
 Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 3/127 (2%)
 Frame = -1

Query: 473 VLYYISTLFANKLIHHTFINRSKF-ANNFYFY*SLLRSSNKISYTYSSEIYLACMFRSNK 297
           V  YIS  +  K++H TF  +  F ++N   Y  +      +   +S+   +A ++ S  
Sbjct: 614 VCAYISNFYKYKILHTTFSGQKVFSSSNVLQYCFIREICFVLEAHWSNPYVIALLYYSLL 673

Query: 296 LCTCTVRVRVGNEF*IF*EFVCTNNLGAVLRAN*HCFKDPLRESVC--LLINFVSCLNYL 123
           L  C  R  V  E      F  T+     L     CFK   +E     +L N  S ++++
Sbjct: 674 LSICNNRATVAKETGDLLNFGITSTDAENLFQQDICFKRESQEEFVKFVLENKDSLMSHM 733

Query: 122 VSTLPEY 102
            + L EY
Sbjct: 734 QTRLDEY 740


>UniRef50_Q54K51 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 539

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = -1

Query: 416 NRSKFANNFYFY*SLLRSSNKISYTYSSEIYLACMFRSN-KLCTCTVRVRVGNEF 255
           N+    NNF+FY + L  +N IS++++S I  + +  +N  L   T+ + +G  F
Sbjct: 193 NQGSGKNNFWFYDNSLHKNNNISFSFASPIINSIIINNNDNLNNDTITI-IGENF 246


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 409,822,666
Number of Sequences: 1657284
Number of extensions: 7304708
Number of successful extensions: 15348
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15347
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)