Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30b24
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    27   1.6  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    26   2.7  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    25   4.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   4.8  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   6.3  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    25   6.3  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    25   8.4  

>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 470 LYYISTLFANKLIHHTFINRSKFANNFYF 384
           LYYIS+ F+N L+H  + N +    +FY+
Sbjct: 322 LYYISSAFSN-LLHCRYFNCNDRLRSFYY 349


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/58 (24%), Positives = 23/58 (39%)
 Frame = +2

Query: 212 LRPDCWYKRIPKIFRTRFLRGPVQCRCKVCLNETYKLNKFPSYMYS*FCLSSEANFNK 385
           + P+C++K         F  GP QC    C N+  +  KF    +    +  E +  K
Sbjct: 30  INPECYHKMCESCVDRIFTTGPAQCPTPGC-NKILRKAKFREQTFEDAQIEREVDVRK 86


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -3

Query: 315 YVSFKQT-LHLHCTGPRRKRVLNI 247
           +VSF+   LH  C G RR RVL I
Sbjct: 626 FVSFQTAMLHTTCNGERRIRVLTI 649


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 230 YKRIPKIFRTRFLRGPVQCRCKVCLNETYKLNKFPSYMYS*FCLSSE 370
           YK I  +F  R      +   ++CL + YK  K  +++Y  F + S+
Sbjct: 315 YKDIFDLFSQRSFLATSKIYRRLCLRDFYKFIKRVAFLYHKFMIPSD 361


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 191  CFKDPLRESVCLLINFVSCLNYLVSTL 111
            C K P+  ++C+L   V C N   +T+
Sbjct: 1922 CHKTPILPAICMLCGSVICFNARQNTV 1948


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 404 FANNFYFY*SLLRSSNKISYTYSSE 330
           FANNFY++   ++  NKIS    S+
Sbjct: 467 FANNFYYFWYGVKDLNKISKFIQSD 491


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 35  KIKYCRQKLNTKFNSCNSTIQ*CT 106
           K K   +KLN  F SCN  I  CT
Sbjct: 61  KAKEELKKLNPNFESCNPHITLCT 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,842,620
Number of Sequences: 5004
Number of extensions: 35132
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)