Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30b21
(466 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421... 29 1.4
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542... 29 1.8
07_03_0486 - 18634813-18635168,18635258-18638726 28 4.3
03_06_0741 + 35893538-35895600,35896274-35896474,35896701-358968... 27 5.6
03_05_0124 + 21034963-21035181,21035618-21037466,21037485-210381... 27 5.6
07_03_0446 - 18285132-18285221,18285437-18285499,18285805-182858... 27 9.8
04_01_0150 + 1741639-1741742,1742432-1742543,1742856-1743594,174... 27 9.8
02_05_0998 + 33391021-33391266,33391354-33391502,33391600-333916... 27 9.8
>06_01_0587 -
4211917-4212021,4212250-4212478,4213426-4213759,
4215116-4215186,4215374-4215493,4216353-4216771,
4216885-4217336,4217434-4217812
Length = 702
Score = 29.5 bits (63), Expect = 1.4
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 124 WRHCLSTQQCQPMDF 168
W+HC++ QCQ +DF
Sbjct: 455 WQHCIAVAQCQALDF 469
>01_01_0703 -
5425713-5425862,5426302-5426451,5426853-5426964,
5427120-5427481,5427578-5427712,5427812-5427889,
5427989-5428174,5428266-5428452,5428552-5428658,
5428732-5428806,5428885-5429040,5429165-5429437,
5429548-5429643,5429724-5429814,5429883-5430385
Length = 886
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 290 NNKKNLYAVLHHSSAVLCRSLHICMVF 210
+N+ L AV HH SA+LC SL VF
Sbjct: 766 SNESILKAVWHHPSAILCCSLKAMPVF 792
>07_03_0486 - 18634813-18635168,18635258-18638726
Length = 1274
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +3
Query: 276 VLLVIGITLLMAHARSVGRIKLCTALSQSLG 368
VLLVI + L+ R G + CTA S SLG
Sbjct: 899 VLLVIVLVLIAVRRRRSGEVN-CTAFSSSLG 928
>03_06_0741 +
35893538-35895600,35896274-35896474,35896701-35896814,
35897570-35897649,35897772-35897896,35898008-35898079
Length = 884
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -2
Query: 261 APFFCSIVQVTTYLYGFCNLVNCPRHDSTTAE 166
APF S Q+ +++ +L++CP H S+++E
Sbjct: 666 APFRASDSQLGSFISSRDDLLSCPNHSSSSSE 697
>03_05_0124 +
21034963-21035181,21035618-21037466,21037485-21038194,
21038426-21038470,21038557-21038745
Length = 1003
Score = 27.5 bits (58), Expect = 5.6
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +2
Query: 65 NQFIVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLTKLQKPYKYVVTCTI 244
N I+D + ++E + QH N+ W+ + +G LTKLQ +Y V
Sbjct: 615 NLKILDARTNFLEELPQGIQKLVKLQHLNLVLWSPLCMPKGIGNLTKLQTLTRYSVGSGN 674
Query: 245 LQKNGAGLH 271
N A LH
Sbjct: 675 WHCNIAELH 683
>07_03_0446 -
18285132-18285221,18285437-18285499,18285805-18285867,
18286079-18286129,18286413-18286506,18286696-18286856,
18287089-18287145,18287380-18287493,18287934-18287999,
18288063-18288266,18289207-18289284,18289669-18289788,
18290425-18290491,18290635-18290735,18290820-18290936,
18292024-18292107,18292181-18292309,18292385-18292510,
18292622-18292696,18292814-18292947,18293032-18293137,
18293220-18293276,18294387-18294573,18295244-18295407,
18296129-18296353,18296538-18296744,18297043-18297375,
18297604-18297993
Length = 1220
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 20 NKIMEVKECNDLDEENQFIVDDVSKIIKEAIE 115
NKI+ VKEC+ D + F++D + + ++E
Sbjct: 667 NKII-VKECHSEDSQCAFVIDKIIETTSSSVE 697
>04_01_0150 +
1741639-1741742,1742432-1742543,1742856-1743594,
1743724-1743776,1743914-1743991,1744107-1744405,
1744660-1745476,1745576-1745842,1745987-1746181,
1746287-1746372,1746469-1746657,1747138-1747207,
1747399-1747552,1747706-1747832,1749158-1749254
Length = 1128
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 396 NIINPCYMPSPKTETMQYIVLFSQRTVHEPS 304
N I C+ PSP T+T+Q I + S V PS
Sbjct: 518 NTIEECFTPSPVTQTVQPIQVASPH-VTSPS 547
>02_05_0998 +
33391021-33391266,33391354-33391502,33391600-33391681,
33391808-33392223,33393659-33393854,33393932-33394074,
33394153-33394327,33394450-33394503,33394701-33394877,
33395832-33395944,33396083-33396265,33396570-33396632,
33396742-33396894,33396922-33396994,33397076-33397206,
33397285-33397420,33397504-33397581,33398146-33398262,
33398473-33398535,33398619-33398720
Length = 949
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -2
Query: 384 PCYMPSPKTETMQYIVL--FSQRTVHEPSVVLS 292
PC+ PSP+ +T+ + +L QR HE ++ L+
Sbjct: 525 PCFEPSPQAQTILHCLLRHLLQRDKHEEALRLA 557
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,465,955
Number of Sequences: 37544
Number of extensions: 226432
Number of successful extensions: 607
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -