Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30b20
(793 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 30 2.4
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 30 2.4
01_05_0645 - 23899579-23904483 29 4.2
01_05_0003 - 16841745-16841912,16842005-16842259,16842938-168430... 29 5.6
10_05_0068 + 8774712-8774787,8774812-8774852,8774895-8775743,877... 28 9.8
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 28 9.8
02_02_0537 + 11308195-11309667 28 9.8
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 611 RLLIP*LHTKNCIHCRRRLYEKSNFRKN 528
R+LI LH +CI C L+++ NFRK+
Sbjct: 1206 RILI--LHNPDCIECLFNLFQEKNFRKH 1231
>02_01_0471 -
3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 593 LHTKNCIHCRRRLYEKSNFRKN 528
LH NCI C L+++ N RKN
Sbjct: 725 LHNANCIECLFDLFQEENLRKN 746
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 64 FRICFVSIYSLFTPAFRPELYKARNSNQRYNF 159
+RI F SI FTP RP ++ N+++NF
Sbjct: 1484 YRIIFSSIPPKFTPPVRPAIHYIYIMNRQFNF 1515
>01_05_0003 -
16841745-16841912,16842005-16842259,16842938-16843085,
16843740-16843854,16844294-16844465,16844481-16844617,
16844738-16844792
Length = 349
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 353 SNGKEITRYQMKTPCDNFLVQTMFKIHLNVSNECA--VKKRHYVFKLNLQDISQKY 514
S K + + + P D + T ++H N + CA + K H KLN++ +++KY
Sbjct: 61 STTKVVYGFNTRAPIDILPLPTSERVH-NDAKACAEFILKMHESTKLNIEKMTEKY 115
>10_05_0068 +
8774712-8774787,8774812-8774852,8774895-8775743,
8776210-8776582,8776814-8777484
Length = 669
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 320 IKLTTGRIVAVSNGKEITRYQMKTPCDNFLVQTMFKIHLNVSNECAVKKRHY 475
+K +G+IV + NG+ + M + L + FK+ SN+ V K Y
Sbjct: 64 LKFNSGKIVQLKNGQHVPSIDMNLVSGSRLTRDGFKLVFE-SNKVVVSKHGY 114
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 64 FRICFVSIYSLFTPAFRPELYKARNSNQRYNF 159
+RI F SI FTP RP ++ N ++NF
Sbjct: 1207 YRIIFSSIPPKFTPPVRPAIHYIYIMNGQFNF 1238
>02_02_0537 + 11308195-11309667
Length = 490
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 64 FRICFVSIYSLFTPAFRPELYKARNSNQRYNF 159
+RI F SI FTP RP ++ N ++NF
Sbjct: 365 YRIIFSSIPPKFTPPVRPAIHYIYIMNGQFNF 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,440,979
Number of Sequences: 37544
Number of extensions: 325340
Number of successful extensions: 574
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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