Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30b18
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    28   1.1  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    27   3.5  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    26   4.6  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   4.6  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    26   4.6  
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    26   6.1  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   6.1  
SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    25   8.0  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    25   8.0  

>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 583 QEAFRQWLARKEQEKREKARLEKQKQHTIPATTPE 687
           QE FR     +E+EKR  A   K ++ +IPA T E
Sbjct: 251 QEQFRLERENREKEKRRIAAQRKLEEASIPAFTEE 285


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 482 LIVKMGLTLFDYPWHLFLRPQLQKKSENVTRKRNRKLFVSGWRARS-KKNAKRRVWKNKN 658
           LI +  + L+D P H ++  +L+K+    +  +N K+FV+ +         K   W    
Sbjct: 525 LIDQHPVILYD-PIHEYVNHELRKRENEFSEHKNVKIFVASYNLNGCSATTKLENWLFPE 583

Query: 659 NT 664
           NT
Sbjct: 584 NT 585


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
            Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/51 (23%), Positives = 22/51 (43%)
 Frame = +2

Query: 530  FLRPQLQKKSENVTRKRNRKLFVSGWRARSKKNAKRRVWKNKNNTLSLQPH 682
            ++          ++  RN    V+  +A +    KRR+ KN+NN    + H
Sbjct: 881  YIDQHFASSKSGISNGRNNNKEVNLTKAENVGIKKRRIMKNENNIYDFEDH 931


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 619 QEKREKARLEKQKQHTIPATTPEQREA 699
           Q K EK+   K K HT  ATT   R +
Sbjct: 157 QPKAEKSTTSKSKSHTTTATTHTSRSS 183


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -3

Query: 520 RIVEKCQAHLHDKYDRYEVCLHLYKLECDLPVMYKIFFSDLLKIHSNPV 374
           R++ K  AH HD  D+ ++ L  Y L       Y +    +L + + PV
Sbjct: 34  RVIIKSNAHKHDPSDKRQIWLEKYYLFVRQIYTYLVTHKVILTLIAVPV 82


>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 97  GHFGDSARNRSDCEL-KRYNHVFDEAGENTHYHSDSDSVASRKSKTRYIN 243
           G F     N S+ ++ K  NHV  +  + T YH+D+  +A       Y+N
Sbjct: 180 GKFKKFVVNHSETDIDKNDNHVSVQTEDGTIYHADTILLAVGAYLNAYLN 229


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 172 GENTHYHSDSDSVASRKSKTRYINPAIYVEKIE 270
           G++T Y    DS+ + KS+  Y+  A+   KIE
Sbjct: 47  GDHTQYAGLRDSLVTYKSENSYVLKALLNAKIE 79


>SPAC644.08 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 584 RKLFVSGWRARSKKNAKRRVWKNKNNTLSLQPH 682
           RKL   G + RS K  + R+WK    +  L  H
Sbjct: 60  RKLHAEGSKERSFKMVQGRIWKKGYESNELTSH 92


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 554 KSENVTRKRNRKLFVSGWRARSKKNAKRRVWKNK-NNTLSLQ 676
           KS  +      +LF+ G R  +   + R VW++K NN ++++
Sbjct: 470 KSMKLINNNPSRLFLHGERIHNGDLSNRTVWRSKTNNAITVE 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.131    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,927,241
Number of Sequences: 5004
Number of extensions: 59046
Number of successful extensions: 216
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)