Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30b17
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY028166-1|AAK19022.1|  342|Caenorhabditis elegans EFL-1 protein.     102   3e-22
AL031627-9|CAA20948.1|  342|Caenorhabditis elegans Hypothetical ...   102   3e-22
AY028167-1|AAK19023.1|  287|Caenorhabditis elegans EFL-2 protein.      65   4e-11
AL117203-19|CAN86631.1|  358|Caenorhabditis elegans Hypothetical...    65   4e-11
AL117203-18|CAN86630.1|  332|Caenorhabditis elegans Hypothetical...    65   4e-11
AL117203-17|CAN86629.1|  284|Caenorhabditis elegans Hypothetical...    65   4e-11
AL117203-16|CAB60421.1|  412|Caenorhabditis elegans Hypothetical...    65   4e-11
Z66520-10|CAA91391.2|  600|Caenorhabditis elegans Hypothetical p...    50   2e-06
Z68319-1|CAA92699.1|  598|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AY028165-1|AAK19021.1|  598|Caenorhabditis elegans DPL-1 protein.      30   1.4  
AC199172-1|ABO33276.1|  277|Caenorhabditis elegans F-box a prote...    29   4.4  
AC006714-17|AAK39598.1|  277|Caenorhabditis elegans F-box a prot...    29   4.4  
Z73899-6|CAA98078.1|  345|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U23515-12|ABB51178.1|  163|Caenorhabditis elegans Hypothetical p...    28   7.7  

>AY028166-1|AAK19022.1|  342|Caenorhabditis elegans EFL-1 protein.
          Length = 342

 Score =  102 bits (244), Expect = 3e-22
 Identities = 58/162 (35%), Positives = 93/162 (57%), Gaps = 11/162 (6%)
 Frame = +1

Query: 103 RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKRSK 282
           R +KSLGLL  +F+ ++Q +  G  DL  A   L VRQKRRIYDITNVLEGIGLIEKRSK
Sbjct: 65  RADKSLGLLAKRFIRMIQYSPYGRCDLNTAAEALNVRQKRRIYDITNVLEGIGLIEKRSK 124

Query: 283 NSIQWRGAGPDYDKN-EIGK----------KVMGLRKQLSYXXXXXXXXXXXXQWIKQST 429
           N IQW+G   D+  N + GK          ++  L+ ++              +W++QS 
Sbjct: 125 NMIQWKGG--DFMLNVKEGKRQSATTEEEDRMEQLKAEIEQLNKEEELIEQRQRWLQQSL 182

Query: 430 KNVLDEPDNQDMCFVMDTEIQQCFQNDLVLVLEAPLGANLSI 555
           +N+ +  +N  + +V+ +++ +   +DL + ++  +G  + +
Sbjct: 183 RNMTESVENNKLSYVLRSQLAEIQGSDLTIGIQTRVGTQVRL 224


>AL031627-9|CAA20948.1|  342|Caenorhabditis elegans Hypothetical
           protein Y102A5C.18 protein.
          Length = 342

 Score =  102 bits (244), Expect = 3e-22
 Identities = 58/162 (35%), Positives = 93/162 (57%), Gaps = 11/162 (6%)
 Frame = +1

Query: 103 RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKRSK 282
           R +KSLGLL  +F+ ++Q +  G  DL  A   L VRQKRRIYDITNVLEGIGLIEKRSK
Sbjct: 65  RADKSLGLLAKRFIRMIQYSPYGRCDLNTAAEALNVRQKRRIYDITNVLEGIGLIEKRSK 124

Query: 283 NSIQWRGAGPDYDKN-EIGK----------KVMGLRKQLSYXXXXXXXXXXXXQWIKQST 429
           N IQW+G   D+  N + GK          ++  L+ ++              +W++QS 
Sbjct: 125 NMIQWKGG--DFMLNVKEGKRQSATTEEEDRMEQLKAEIEQLNKEEELIEQRQRWLQQSL 182

Query: 430 KNVLDEPDNQDMCFVMDTEIQQCFQNDLVLVLEAPLGANLSI 555
           +N+ +  +N  + +V+ +++ +   +DL + ++  +G  + +
Sbjct: 183 RNMTESVENNKLSYVLRSQLAEIQGSDLTIGIQTRVGTQVRL 224


>AY028167-1|AAK19023.1|  287|Caenorhabditis elegans EFL-2 protein.
          Length = 287

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 37/88 (42%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
 Frame = +1

Query: 103 RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKRSK 282
           R ++SLGL+T +F+SL Q+ +  VL+L      L +  KRR+YD+ NVLEG+G +EK  K
Sbjct: 39  RSQQSLGLITQRFMSLRQRNE--VLNLNEVAKELNI-SKRRVYDVINVLEGLGYVEKVEK 95

Query: 283 NSIQWRGAGPD-YDKNEIGKKVMGLRKQ 363
           N+I+W G   +  ++N +  +V  LR+Q
Sbjct: 96  NNIRWIGDNNNSEEQNALEARVEMLRQQ 123


>AL117203-19|CAN86631.1|  358|Caenorhabditis elegans Hypothetical
           protein Y48C3A.17d protein.
          Length = 358

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 37/88 (42%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
 Frame = +1

Query: 103 RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKRSK 282
           R ++SLGL+T +F+SL Q+ +  VL+L      L +  KRR+YD+ NVLEG+G +EK  K
Sbjct: 36  RSQQSLGLITQRFMSLRQRNE--VLNLNEVAKELNI-SKRRVYDVINVLEGLGYVEKVEK 92

Query: 283 NSIQWRGAGPD-YDKNEIGKKVMGLRKQ 363
           N+I+W G   +  ++N +  +V  LR+Q
Sbjct: 93  NNIRWIGDNNNSEEQNALEARVEMLRQQ 120


>AL117203-18|CAN86630.1|  332|Caenorhabditis elegans Hypothetical
           protein Y48C3A.17c protein.
          Length = 332

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 37/88 (42%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
 Frame = +1

Query: 103 RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKRSK 282
           R ++SLGL+T +F+SL Q+ +  VL+L      L +  KRR+YD+ NVLEG+G +EK  K
Sbjct: 36  RSQQSLGLITQRFMSLRQRNE--VLNLNEVAKELNI-SKRRVYDVINVLEGLGYVEKVEK 92

Query: 283 NSIQWRGAGPD-YDKNEIGKKVMGLRKQ 363
           N+I+W G   +  ++N +  +V  LR+Q
Sbjct: 93  NNIRWIGDNNNSEEQNALEARVEMLRQQ 120


>AL117203-17|CAN86629.1|  284|Caenorhabditis elegans Hypothetical
           protein Y48C3A.17b protein.
          Length = 284

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 37/88 (42%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
 Frame = +1

Query: 103 RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKRSK 282
           R ++SLGL+T +F+SL Q+ +  VL+L      L +  KRR+YD+ NVLEG+G +EK  K
Sbjct: 36  RSQQSLGLITQRFMSLRQRNE--VLNLNEVAKELNI-SKRRVYDVINVLEGLGYVEKVEK 92

Query: 283 NSIQWRGAGPD-YDKNEIGKKVMGLRKQ 363
           N+I+W G   +  ++N +  +V  LR+Q
Sbjct: 93  NNIRWIGDNNNSEEQNALEARVEMLRQQ 120


>AL117203-16|CAB60421.1|  412|Caenorhabditis elegans Hypothetical
           protein Y48C3A.17a protein.
          Length = 412

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 37/88 (42%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
 Frame = +1

Query: 103 RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKRSK 282
           R ++SLGL+T +F+SL Q+ +  VL+L      L +  KRR+YD+ NVLEG+G +EK  K
Sbjct: 36  RSQQSLGLITQRFMSLRQRNE--VLNLNEVAKELNI-SKRRVYDVINVLEGLGYVEKVEK 92

Query: 283 NSIQWRGAGPD-YDKNEIGKKVMGLRKQ 363
           N+I+W G   +  ++N +  +V  LR+Q
Sbjct: 93  NNIRWIGDNNNSEEQNALEARVEMLRQQ 120


>Z66520-10|CAA91391.2|  600|Caenorhabditis elegans Hypothetical
           protein F49E12.6 protein.
          Length = 600

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
 Frame = +1

Query: 103 RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVR---QKRRIYDITNVLEGIGLIEK 273
           R EKSLGLL  +F+  + +   G    ++    +A +   +KRRIYDI NV+E +  ++K
Sbjct: 95  RKEKSLGLLCQRFLIAINEETVGSSTREVHLETVARKMNVEKRRIYDIVNVMEALDAMQK 154

Query: 274 RSKNSIQWRG 303
            +K+  QW+G
Sbjct: 155 TNKSYYQWQG 164



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +1

Query: 220 RRIYDITNVLEGIGLIEK 273
           RR+YDI NVL  +GLI+K
Sbjct: 309 RRLYDIANVLVALGLIKK 326


>Z68319-1|CAA92699.1|  598|Caenorhabditis elegans Hypothetical
           protein T23G7.1 protein.
          Length = 598

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 217 KRRIYDITNVLEGIGLIEKRSKNSIQWRG 303
           +RR+YD  NVL  + +I K SK  I+W G
Sbjct: 125 RRRVYDALNVLLAMNIITK-SKKDIRWIG 152


>AY028165-1|AAK19021.1|  598|Caenorhabditis elegans DPL-1 protein.
          Length = 598

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 217 KRRIYDITNVLEGIGLIEKRSKNSIQWRG 303
           +RR+YD  NVL  + +I K SK  I+W G
Sbjct: 125 RRRVYDALNVLLAMNIITK-SKKDIRWIG 152


>AC199172-1|ABO33276.1|  277|Caenorhabditis elegans F-box a
          protein protein 151 protein.
          Length = 277

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 97 ILNQSLPKLNRKHRFFVKLSVKILRR 20
          +LN+ L KL  KHR  V+   +ILRR
Sbjct: 10 VLNEILSKLEPKHRLVVRKVCRILRR 35


>AC006714-17|AAK39598.1|  277|Caenorhabditis elegans F-box a
          protein protein 78 protein.
          Length = 277

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 97 ILNQSLPKLNRKHRFFVKLSVKILRR 20
          +LN+ L KL  KHR  V+   +ILRR
Sbjct: 10 VLNEILSKLEPKHRLVVRKVCRILRR 35


>Z73899-6|CAA98078.1|  345|Caenorhabditis elegans Hypothetical
           protein ZK829.8 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -3

Query: 430 SYFV*STVIAYLIIFHVH--PNSLIVFLIPLPFYQFHFYHNRDLLLSIECYFYFVF 269
           S FV     ++++I H+   P+  I  LI   F QFH   +RDL + +  Y Y V+
Sbjct: 137 SLFVMCFGSSWMLIGHITMWPDDHIYDLIDEKFIQFHNTSSRDLAMIVANYEYPVY 192


>U23515-12|ABB51178.1|  163|Caenorhabditis elegans Hypothetical
           protein R144.13 protein.
          Length = 163

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 541 ANLSIGTQPNKDRESNFLLHIKSSESMGVVLLND 642
           A L IG  P  ++ S+ ++HIK S    VV+ ND
Sbjct: 48  ATLEIGFPPLSEKYSSRVIHIKPSVVHSVVIEND 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,450,818
Number of Sequences: 27780
Number of extensions: 287636
Number of successful extensions: 683
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)