Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30b15
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...   128   8e-31
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...   116   5e-27
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    92   9e-20
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    87   2e-18
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    85   1e-17
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    84   2e-17
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    29   0.90 
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    25   8.4  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    25   8.4  

>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score =  128 bits (309), Expect = 8e-31
 Identities = 62/152 (40%), Positives = 94/152 (61%), Gaps = 6/152 (3%)
 Frame = +2

Query: 149 ILVQMLKDEDNKYCVDCDA-KGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLDSW 325
           +L  +L++  NK C DC   + PRWASWNLG+F+CIRC+G+HR+LGVH+S+VKSV+LDSW
Sbjct: 15  VLKSLLREPYNKVCADCKRNEQPRWASWNLGVFICIRCSGVHRSLGVHVSRVKSVDLDSW 74

Query: 326 TPEQVVSLQQMGNSRARAVYEANLPDSFRRPQNDMSLESFIRAKYEQKKYIAKEWVP-PQ 502
           T EQ  ++ + GN RA   +EA L        +D  + +FI+ KYE KK++    +P P+
Sbjct: 75  TDEQTENMTRWGNERANLYWEAKLAGG--HVPSDSKIATFIKTKYEFKKWVLYPEIPSPE 132

Query: 503 LPKVNWD----KEIDEEMDRQKRKKKSATSSL 586
             K   +     E++  +D     + S+  S+
Sbjct: 133 TLKPEQNTRPVSEVNASLDLNTASRSSSAHSV 164


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score =  116 bits (278), Expect = 5e-27
 Identities = 61/158 (38%), Positives = 81/158 (51%), Gaps = 8/158 (5%)
 Frame = +2

Query: 179 NKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLDSWTPEQVVSLQQM 358
           N  C DC  +G +WASWNLGIFLC+RCA IHR LG H+SKVKS++LD W+ +Q+  ++  
Sbjct: 20  NNLCADCSTRGVQWASWNLGIFLCLRCATIHRKLGTHVSKVKSISLDEWSNDQIEKMKHW 79

Query: 359 GNSRARAVYEANLPDSFRRPQNDMS----LESFIRAKYEQKKYI----AKEWVPPQLPKV 514
           GN  A   +  N P S   P N +S    +E +IR KYE+K ++    +    PP LP  
Sbjct: 80  GNINANRYWNPN-PLSHPLPTNALSDEHVMEKYIRDKYERKLFLDENHSTNSKPPSLPPR 138

Query: 515 NWDKEIDEEMDRQKRKKKSATSSLGPLPAPAVADKKYN 628
                    M      K     SL  L     +D   N
Sbjct: 139 TKSSSQSSPMASTSTSKSRYADSLSTLHDMGFSDDSVN 176


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 923

 Score = 91.9 bits (218), Expect = 9e-20
 Identities = 50/143 (34%), Positives = 81/143 (56%), Gaps = 3/143 (2%)
 Frame = +2

Query: 146  NILVQMLKDED--NKYCVDCDA-KGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNL 316
            NI +QML+  D  N  C DC + K   W S N+ + LCI C+GIHR+LG HISK +S+ L
Sbjct: 714  NIFIQMLRKTDVSNSVCADCGSVKDVTWCSINIPVVLCIECSGIHRSLGTHISKTRSLLL 773

Query: 317  DSWTPEQVVSLQQMGNSRARAVYEANLPDSFRRPQNDMSLESFIRAKYEQKKYIAKEWVP 496
            DS + +  V L ++GN+    VYE  L +   +P+ + + +  ++  + QKKY+   ++ 
Sbjct: 774  DSLSQQSKVLLCKIGNAAVNRVYEKGLSNPSLKPKPEHNAQ--VKLAFAQKKYVEHAFI- 830

Query: 497  PQLPKVNWDKEIDEEMDRQKRKK 565
                 V+ D  + E +++ K  K
Sbjct: 831  -DFAGVDADATLLEGLEQNKISK 852


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 37/75 (49%), Positives = 52/75 (69%)
 Frame = +2

Query: 152 LVQMLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLDSWTP 331
           L Q+ +  +NK C DCDA  P+WAS NLGIF+C+ C+G HR LGV  S V+S+ +D+W+ 
Sbjct: 5   LDQLTRLPENKKCFDCDAPNPQWASCNLGIFICLDCSGQHRGLGVEKSFVRSITMDNWSE 64

Query: 332 EQVVSLQQMGNSRAR 376
            QV  ++  GNS A+
Sbjct: 65  RQVKMMEVGGNSNAK 79


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 870

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 49/161 (30%), Positives = 84/161 (52%), Gaps = 4/161 (2%)
 Frame = +2

Query: 8    SLSLQQTSLFHPFHFIVFQQLISG*IIEMTSKSEKDRAKQIQDRCQNILVQMLKD--EDN 181
            S++ ++TS+ H     + + L     +   S+   D  ++ Q +  + LV+ LK+    +
Sbjct: 625  SMNSEETSVKHGPTSTIGKALQRVASVTSPSRHNSDSKEKKQTKSPS-LVKTLKEMHSSD 683

Query: 182  KYCVDCDAKGP-RWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLDSWTPEQVVSLQQM 358
            + C DC+      W + N  + LCI C+GIHR+LG HI+K++S+ LD + PE V  L   
Sbjct: 684  QSCADCNTTARVEWCAINFPVVLCIDCSGIHRSLGTHITKIRSLTLDKFNPETVDLLYAT 743

Query: 359  GNSRARAVYEANLPD-SFRRPQNDMSLESFIRAKYEQKKYI 478
            GNS    +YE  + D   +  +N      F++ KY  K++I
Sbjct: 744  GNSFVNEIYEGGITDWKIKNFENQERRVQFVKDKYLYKRFI 784


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
 Frame = +2

Query: 131 QDRCQNILVQMLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKV--- 301
           ++  Q +L  +    DNK C DC AK P W+S   GI+LC+ C+  HRN+GVHIS V   
Sbjct: 5   KEESQKLLTSLRSQRDNKVCFDCGAKNPTWSSTTFGIYLCLDCSAAHRNMGVHISFVRFL 64

Query: 302 KSVNLDSWTPEQVVSLQQMGNSRARAVYE 388
           +S  LDSWT  Q+  ++  GN  AR  ++
Sbjct: 65  RSTVLDSWTYAQLRVMRVGGNENARNYFK 93


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 446 IRAKYEQKKYIAKEWVPPQLPKVNWDKEIDEEM 544
           +R   +Q K    EW+ P + K  W +E DE++
Sbjct: 37  VRKTPKQCKARWYEWIDPSIKKTEWSREEDEKL 69


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +2

Query: 386 EANLPDSFRRPQNDMSLESF--IRAKYEQKKYIAKEWVPPQLPKVNWDKEIDEEMDRQKR 559
           E  LPD        M LE    +  KY+ K   A + V  +LP+V+  K+   E  ++ +
Sbjct: 14  EVKLPDHLDDFDGFMGLEEIEGVDIKYQPKG--AMKEVIYELPEVHEKKDKKPEKRKKDQ 71

Query: 560 KKKSATSSLGPLPAPAV 610
           K+ S     G   +P +
Sbjct: 72  KEASEKKKKGKRTSPTI 88


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 366 LFPICCSDTTCSGVHESRLTLFTLEM*TPRFRWIPAQRMHRN 241
           L  I    T CS V +  LT F L+  + +FR++     HRN
Sbjct: 211 LLQILMEYTDCSNVRD--LTRFDLKRLSRKFRFLKVTCQHRN 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,125,679
Number of Sequences: 5004
Number of extensions: 65853
Number of successful extensions: 242
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)