Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30b14
         (749 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2FC05 Cluster: Putative uncharacterized protein; n=1; ...    33   5.7  
UniRef50_A4RSS3 Cluster: Eukaryotic translation initiation facto...    33   9.9  

>UniRef50_A2FC05 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 246

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +1

Query: 319 FQIKPSRHIAEVLRWKLFLRKLDFSYNLRRQ*MQFFVCSYGINNLTEIGSL 471
           +Q  P++HIA +L  KL  RK +FS   RR  ++ F+ S    N+ E  ++
Sbjct: 65  YQNIPTKHIAIILMKKLIQRKFEFSSLERRVIVEIFIKSPPTRNMKESAAI 115


>UniRef50_A4RSS3 Cluster: Eukaryotic translation initiation factor 3
           subunit 8; n=2; Ostreococcus|Rep: Eukaryotic translation
           initiation factor 3 subunit 8 - Ostreococcus lucimarinus
           CCE9901
          Length = 863

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = -2

Query: 268 RTSIVEKLRYTPPISKIKXVVR*SSL*VVSXMXDLT-KISYVMKIPLFKSSFTSEQSLL 95
           RT +VE+LRY   +SK         L ++S   DLT  +S  M +P+++S  ++  S+L
Sbjct: 244 RTRVVEQLRYISTLSKCPAQEVEVLLHIISAQFDLTGSMSTFMPVPVWRSCLSNVLSIL 302


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 636,478,164
Number of Sequences: 1657284
Number of extensions: 11758498
Number of successful extensions: 26551
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26544
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)