Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30b14
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    28   1.6  
SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr ...    27   3.8  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    26   6.6  
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch...    25   8.7  

>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -1

Query: 392 EKSNFRKNNFHRSTSAI 342
           EKSNFR+ NF R+ SA+
Sbjct: 393 EKSNFREENFQRAMSAL 409


>SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = -3

Query: 651 ALQIMVEIRLFHNVCGSYKIDLNSLEYCKYQLFYLGKTLTIIF 523
           A ++ + +R+ HN        +N++  C  QL+  G+T++++F
Sbjct: 98  ARELKIPVRMIHNAS-----IMNAIGACGLQLYKFGQTVSLVF 135


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +2

Query: 227 NWRGISKFLNNRRTS--LRKDGTEQRQAWRHYVFKLNLQDISQKYFDG 364
           N + +  F+  R  S  + KDG E  + W+   F L L DI      G
Sbjct: 373 NQKILETFMKKRNISSEVAKDGLEALEKWKKKSFHLILMDIQLPTMSG 420


>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 237

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -3

Query: 654 VALQIMVEIRLFHNVCGSYKIDLNSLEYCKYQLFYLGKTLTIIFTFHLIENISSQ 490
           +A ++M +     N+ GS  ID+NS+     +   +G   T+I    L E I S+
Sbjct: 120 LAHKVMAKPGKLKNILGSNVIDVNSIHDQGIKTLGMGLQSTVISDDGLCEGIESK 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,272
Number of Sequences: 5004
Number of extensions: 55597
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)